Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24416 | 5' | -52.2 | NC_005264.1 | + | 160936 | 0.66 | 0.991089 |
Target: 5'- gGGAUCccGCaGUCGCGgcggggUCUGUagcuuucuGCCACg -3' miRNA: 3'- -CCUAGcaUG-CAGUGCa-----AGACG--------CGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 132567 | 0.66 | 0.991089 |
Target: 5'- --uUCGU-CGUCGCGgcc-GCGCUACa -3' miRNA: 3'- ccuAGCAuGCAGUGCaagaCGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 94481 | 0.66 | 0.990728 |
Target: 5'- aGGUCGUGCGcaccaggaacaugcUCGCGUUagUGCagccgucgGCCACg -3' miRNA: 3'- cCUAGCAUGC--------------AGUGCAAg-ACG--------CGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 85691 | 0.66 | 0.990356 |
Target: 5'- cGGAguUCGcgguCGgCAUGUagauucgcucauccgUCUGCGCCGCg -3' miRNA: 3'- -CCU--AGCau--GCaGUGCA---------------AGACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 67380 | 0.66 | 0.989841 |
Target: 5'- -aGUCGgcgGCGUCgucuACGa--UGCGCCGCa -3' miRNA: 3'- ccUAGCa--UGCAG----UGCaagACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 85032 | 0.66 | 0.988461 |
Target: 5'- --uUCGUccgcgcCGUCAaugccgUCUGCGCCGCg -3' miRNA: 3'- ccuAGCAu-----GCAGUgca---AGACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 120296 | 0.66 | 0.988461 |
Target: 5'- cGGcgCGaagACG-CGCGgaagCUGCGcCCACg -3' miRNA: 3'- -CCuaGCa--UGCaGUGCaa--GACGC-GGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 81944 | 0.66 | 0.988315 |
Target: 5'- cGGUUGUcccuccgGCGUCAUGca-UGCGCCAg -3' miRNA: 3'- cCUAGCA-------UGCAGUGCaagACGCGGUg -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 31818 | 0.66 | 0.986939 |
Target: 5'- aGGUCGUGa--CGCGUacUCUGCcguGCCGCg -3' miRNA: 3'- cCUAGCAUgcaGUGCA--AGACG---CGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 150844 | 0.66 | 0.986939 |
Target: 5'- aGGUCGUGa--CGCGUacUCUGCcguGCCGCg -3' miRNA: 3'- cCUAGCAUgcaGUGCA--AGACG---CGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 114746 | 0.66 | 0.985267 |
Target: 5'- --cUCGUgaaaGCGcagCGCGUUCuugcccUGCGCCGCu -3' miRNA: 3'- ccuAGCA----UGCa--GUGCAAG------ACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 142862 | 0.67 | 0.983436 |
Target: 5'- cGGUCGguuUGUUGCGUcgaCUcGCGCCGCg -3' miRNA: 3'- cCUAGCau-GCAGUGCAa--GA-CGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 42943 | 0.67 | 0.981439 |
Target: 5'- -aGUCGUACGUC-CGg---GCGCgGCa -3' miRNA: 3'- ccUAGCAUGCAGuGCaagaCGCGgUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 34617 | 0.67 | 0.981439 |
Target: 5'- cGGggUGUGgGg-GCGUgUCUGCGUCACa -3' miRNA: 3'- -CCuaGCAUgCagUGCA-AGACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 161970 | 0.67 | 0.981439 |
Target: 5'- -aGUCGUACGUC-CGg---GCGCgGCa -3' miRNA: 3'- ccUAGCAUGCAGuGCaagaCGCGgUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 153644 | 0.67 | 0.981439 |
Target: 5'- cGGggUGUGgGg-GCGUgUCUGCGUCACa -3' miRNA: 3'- -CCuaGCAUgCagUGCA-AGACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 134556 | 0.67 | 0.97691 |
Target: 5'- aGGccaaGUAcccCGUCACGacCUGCGCCAa -3' miRNA: 3'- -CCuag-CAU---GCAGUGCaaGACGCGGUg -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 108516 | 0.67 | 0.974363 |
Target: 5'- cGGcGUCGUGCGcCAccacCGUggcacaCUGCGUCGCa -3' miRNA: 3'- -CC-UAGCAUGCaGU----GCAa-----GACGCGGUG- -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 42071 | 0.67 | 0.974363 |
Target: 5'- cGGcgCGUgGCGUCAg---CUGCGCCGg -3' miRNA: 3'- -CCuaGCA-UGCAGUgcaaGACGCGGUg -5' |
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24416 | 5' | -52.2 | NC_005264.1 | + | 46002 | 0.68 | 0.968667 |
Target: 5'- ---gCGUACGcCAagUGUUCUGgGCCAUa -3' miRNA: 3'- ccuaGCAUGCaGU--GCAAGACgCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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