miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24416 5' -52.2 NC_005264.1 + 26358 0.68 0.95852
Target:  5'- --cUUGUGCGcCGCGgcaggCUGCGCgGCg -3'
miRNA:   3'- ccuAGCAUGCaGUGCaa---GACGCGgUG- -5'
24416 5' -52.2 NC_005264.1 + 28043 0.69 0.94632
Target:  5'- aGGAUUGggGCGaggauUCGCGaUgUGCGCCAUg -3'
miRNA:   3'- -CCUAGCa-UGC-----AGUGCaAgACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 29291 0.7 0.915419
Target:  5'- gGGcgCGUGCcUCgACGUUUucuuUGCGCCAUg -3'
miRNA:   3'- -CCuaGCAUGcAG-UGCAAG----ACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 30044 0.72 0.842473
Target:  5'- aGGAUCGcgUACGgCACGUuaauuagccccucgUCgGCGCCGCc -3'
miRNA:   3'- -CCUAGC--AUGCaGUGCA--------------AGaCGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 31818 0.66 0.986939
Target:  5'- aGGUCGUGa--CGCGUacUCUGCcguGCCGCg -3'
miRNA:   3'- cCUAGCAUgcaGUGCA--AGACG---CGGUG- -5'
24416 5' -52.2 NC_005264.1 + 32917 0.69 0.94632
Target:  5'- cGAUCGcgcagGgGUCGCGgg--GCGCCGCg -3'
miRNA:   3'- cCUAGCa----UgCAGUGCaagaCGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 34617 0.67 0.981439
Target:  5'- cGGggUGUGgGg-GCGUgUCUGCGUCACa -3'
miRNA:   3'- -CCuaGCAUgCagUGCA-AGACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 42071 0.67 0.974363
Target:  5'- cGGcgCGUgGCGUCAg---CUGCGCCGg -3'
miRNA:   3'- -CCuaGCA-UGCAGUgcaaGACGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 42943 0.67 0.981439
Target:  5'- -aGUCGUACGUC-CGg---GCGCgGCa -3'
miRNA:   3'- ccUAGCAUGCAGuGCaagaCGCGgUG- -5'
24416 5' -52.2 NC_005264.1 + 46002 0.68 0.968667
Target:  5'- ---gCGUACGcCAagUGUUCUGgGCCAUa -3'
miRNA:   3'- ccuaGCAUGCaGU--GCAAGACgCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 46883 0.7 0.903168
Target:  5'- -uGUCGgGCGcCGCGUaccuccuagCUGCGCCGCg -3'
miRNA:   3'- ccUAGCaUGCaGUGCAa--------GACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 48861 0.7 0.903168
Target:  5'- cGGUCGUGuCGUCGC-UUCUgacGCGCCGg -3'
miRNA:   3'- cCUAGCAU-GCAGUGcAAGA---CGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 67380 0.66 0.989841
Target:  5'- -aGUCGgcgGCGUCgucuACGa--UGCGCCGCa -3'
miRNA:   3'- ccUAGCa--UGCAG----UGCaagACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 72476 0.73 0.801912
Target:  5'- cGGAUCGUguaccggcaGCGUCgGCGgguugaagaUCUGCGCCGa -3'
miRNA:   3'- -CCUAGCA---------UGCAG-UGCa--------AGACGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 81944 0.66 0.988315
Target:  5'- cGGUUGUcccuccgGCGUCAUGca-UGCGCCAg -3'
miRNA:   3'- cCUAGCA-------UGCAGUGCaagACGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 85032 0.66 0.988461
Target:  5'- --uUCGUccgcgcCGUCAaugccgUCUGCGCCGCg -3'
miRNA:   3'- ccuAGCAu-----GCAGUgca---AGACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 85691 0.66 0.990356
Target:  5'- cGGAguUCGcgguCGgCAUGUagauucgcucauccgUCUGCGCCGCg -3'
miRNA:   3'- -CCU--AGCau--GCaGUGCA---------------AGACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 94481 0.66 0.990728
Target:  5'- aGGUCGUGCGcaccaggaacaugcUCGCGUUagUGCagccgucgGCCACg -3'
miRNA:   3'- cCUAGCAUGC--------------AGUGCAAg-ACG--------CGGUG- -5'
24416 5' -52.2 NC_005264.1 + 95518 0.81 0.382681
Target:  5'- cGAUCGUACGUgACGUUauggaagGCGCCGCc -3'
miRNA:   3'- cCUAGCAUGCAgUGCAAga-----CGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 102920 1.13 0.004127
Target:  5'- cGGAUCGUACGUCACGUUCUGCGCCACa -3'
miRNA:   3'- -CCUAGCAUGCAGUGCAAGACGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.