miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24416 5' -52.2 NC_005264.1 + 108516 0.67 0.974363
Target:  5'- cGGcGUCGUGCGcCAccacCGUggcacaCUGCGUCGCa -3'
miRNA:   3'- -CC-UAGCAUGCaGU----GCAa-----GACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 114746 0.66 0.985267
Target:  5'- --cUCGUgaaaGCGcagCGCGUUCuugcccUGCGCCGCu -3'
miRNA:   3'- ccuAGCA----UGCa--GUGCAAG------ACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 120296 0.66 0.988461
Target:  5'- cGGcgCGaagACG-CGCGgaagCUGCGcCCACg -3'
miRNA:   3'- -CCuaGCa--UGCaGUGCaa--GACGC-GGUG- -5'
24416 5' -52.2 NC_005264.1 + 122251 0.68 0.957772
Target:  5'- gGGAUCGcg-GUUACGUUCaagcagaacauaGCGCCGCu -3'
miRNA:   3'- -CCUAGCaugCAGUGCAAGa-----------CGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 132567 0.66 0.991089
Target:  5'- --uUCGU-CGUCGCGgcc-GCGCUACa -3'
miRNA:   3'- ccuAGCAuGCAGUGCaagaCGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 134556 0.67 0.97691
Target:  5'- aGGccaaGUAcccCGUCACGacCUGCGCCAa -3'
miRNA:   3'- -CCuag-CAU---GCAGUGCaaGACGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 142862 0.67 0.983436
Target:  5'- cGGUCGguuUGUUGCGUcgaCUcGCGCCGCg -3'
miRNA:   3'- cCUAGCau-GCAGUGCAa--GA-CGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 146254 0.68 0.968667
Target:  5'- uGGGUCGgccggaGUCAUGU---GCGCCGCc -3'
miRNA:   3'- -CCUAGCaug---CAGUGCAagaCGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 150844 0.66 0.986939
Target:  5'- aGGUCGUGa--CGCGUacUCUGCcguGCCGCg -3'
miRNA:   3'- cCUAGCAUgcaGUGCA--AGACG---CGGUG- -5'
24416 5' -52.2 NC_005264.1 + 153644 0.67 0.981439
Target:  5'- cGGggUGUGgGg-GCGUgUCUGCGUCACa -3'
miRNA:   3'- -CCuaGCAUgCagUGCA-AGACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 160936 0.66 0.991089
Target:  5'- gGGAUCccGCaGUCGCGgcggggUCUGUagcuuucuGCCACg -3'
miRNA:   3'- -CCUAGcaUG-CAGUGCa-----AGACG--------CGGUG- -5'
24416 5' -52.2 NC_005264.1 + 161970 0.67 0.981439
Target:  5'- -aGUCGUACGUC-CGg---GCGCgGCa -3'
miRNA:   3'- ccUAGCAUGCAGuGCaagaCGCGgUG- -5'
24416 5' -52.2 NC_005264.1 + 162673 0.69 0.936996
Target:  5'- cGGGUCGUAgGUgUACGgUCggcGCGCUGCg -3'
miRNA:   3'- -CCUAGCAUgCA-GUGCaAGa--CGCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.