miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24416 5' -52.2 NC_005264.1 + 67380 0.66 0.989841
Target:  5'- -aGUCGgcgGCGUCgucuACGa--UGCGCCGCa -3'
miRNA:   3'- ccUAGCa--UGCAG----UGCaagACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 48861 0.7 0.903168
Target:  5'- cGGUCGUGuCGUCGC-UUCUgacGCGCCGg -3'
miRNA:   3'- cCUAGCAU-GCAGUGcAAGA---CGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 46883 0.7 0.903168
Target:  5'- -uGUCGgGCGcCGCGUaccuccuagCUGCGCCGCg -3'
miRNA:   3'- ccUAGCaUGCaGUGCAa--------GACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 46002 0.68 0.968667
Target:  5'- ---gCGUACGcCAagUGUUCUGgGCCAUa -3'
miRNA:   3'- ccuaGCAUGCaGU--GCAAGACgCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 42943 0.67 0.981439
Target:  5'- -aGUCGUACGUC-CGg---GCGCgGCa -3'
miRNA:   3'- ccUAGCAUGCAGuGCaagaCGCGgUG- -5'
24416 5' -52.2 NC_005264.1 + 42071 0.67 0.974363
Target:  5'- cGGcgCGUgGCGUCAg---CUGCGCCGg -3'
miRNA:   3'- -CCuaGCA-UGCAGUgcaaGACGCGGUg -5'
24416 5' -52.2 NC_005264.1 + 34617 0.67 0.981439
Target:  5'- cGGggUGUGgGg-GCGUgUCUGCGUCACa -3'
miRNA:   3'- -CCuaGCAUgCagUGCA-AGACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 32917 0.69 0.94632
Target:  5'- cGAUCGcgcagGgGUCGCGgg--GCGCCGCg -3'
miRNA:   3'- cCUAGCa----UgCAGUGCaagaCGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 31818 0.66 0.986939
Target:  5'- aGGUCGUGa--CGCGUacUCUGCcguGCCGCg -3'
miRNA:   3'- cCUAGCAUgcaGUGCA--AGACG---CGGUG- -5'
24416 5' -52.2 NC_005264.1 + 30044 0.72 0.842473
Target:  5'- aGGAUCGcgUACGgCACGUuaauuagccccucgUCgGCGCCGCc -3'
miRNA:   3'- -CCUAGC--AUGCaGUGCA--------------AGaCGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 29291 0.7 0.915419
Target:  5'- gGGcgCGUGCcUCgACGUUUucuuUGCGCCAUg -3'
miRNA:   3'- -CCuaGCAUGcAG-UGCAAG----ACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 28043 0.69 0.94632
Target:  5'- aGGAUUGggGCGaggauUCGCGaUgUGCGCCAUg -3'
miRNA:   3'- -CCUAGCa-UGC-----AGUGCaAgACGCGGUG- -5'
24416 5' -52.2 NC_005264.1 + 26358 0.68 0.95852
Target:  5'- --cUUGUGCGcCGCGgcaggCUGCGCgGCg -3'
miRNA:   3'- ccuAGCAUGCaGUGCaa---GACGCGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.