miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24417 5' -59.1 NC_005264.1 + 9957 0.66 0.809667
Target:  5'- cGGCGAGggacugcCGGaccCGUGGGCGAuGCCGAg -3'
miRNA:   3'- cCCGCUC-------GCCa--GCAUCUGCUcCGGUU- -5'
24417 5' -59.1 NC_005264.1 + 156136 0.66 0.801887
Target:  5'- uGGUGGGCaGGaCGaGGGCGAGGCg-- -3'
miRNA:   3'- cCCGCUCG-CCaGCaUCUGCUCCGguu -5'
24417 5' -59.1 NC_005264.1 + 150554 0.66 0.801887
Target:  5'- cGGGCGGGgagGGcCGUuggGGugGGGGCgGAc -3'
miRNA:   3'- -CCCGCUCg--CCaGCA---UCugCUCCGgUU- -5'
24417 5' -59.1 NC_005264.1 + 124985 0.66 0.801887
Target:  5'- aGGGC-AGCGGcgcauucgCGgaugggAGACGuGGGCCAAg -3'
miRNA:   3'- -CCCGcUCGCCa-------GCa-----UCUGC-UCCGGUU- -5'
24417 5' -59.1 NC_005264.1 + 37109 0.66 0.801887
Target:  5'- uGGUGGGCaGGaCGaGGGCGAGGCg-- -3'
miRNA:   3'- cCCGCUCG-CCaGCaUCUGCUCCGguu -5'
24417 5' -59.1 NC_005264.1 + 31527 0.66 0.801887
Target:  5'- cGGGCGGGgagGGcCGUuggGGugGGGGCgGAc -3'
miRNA:   3'- -CCCGCUCg--CCaGCA---UCugCUCCGgUU- -5'
24417 5' -59.1 NC_005264.1 + 146828 0.66 0.801887
Target:  5'- aGGCGcGGCGGUCGUcgccugccauGAUGcGGCUAAa -3'
miRNA:   3'- cCCGC-UCGCCAGCAu---------CUGCuCCGGUU- -5'
24417 5' -59.1 NC_005264.1 + 99976 0.66 0.793104
Target:  5'- aGGCcaAGCGccUCGUGGACGAGGCg-- -3'
miRNA:   3'- cCCGc-UCGCc-AGCAUCUGCUCCGguu -5'
24417 5' -59.1 NC_005264.1 + 53175 0.66 0.793104
Target:  5'- uGGGCGAGUuccacGUCG-AGucucCGGGGCCGc -3'
miRNA:   3'- -CCCGCUCGc----CAGCaUCu---GCUCCGGUu -5'
24417 5' -59.1 NC_005264.1 + 102114 0.66 0.784182
Target:  5'- cGGCuGGCGG-CGgu-ACGAGGCCGc -3'
miRNA:   3'- cCCGcUCGCCaGCaucUGCUCCGGUu -5'
24417 5' -59.1 NC_005264.1 + 48375 0.66 0.784182
Target:  5'- gGGGCGcAGcCGGUagacuggggCGUcGGGCGGcGGCCAGg -3'
miRNA:   3'- -CCCGC-UC-GCCA---------GCA-UCUGCU-CCGGUU- -5'
24417 5' -59.1 NC_005264.1 + 35787 0.66 0.784182
Target:  5'- aGGGCGcgguGGCGccGUCGUGG-CGGGcGCCu- -3'
miRNA:   3'- -CCCGC----UCGC--CAGCAUCuGCUC-CGGuu -5'
24417 5' -59.1 NC_005264.1 + 154813 0.66 0.784182
Target:  5'- aGGGCGcgguGGCGccGUCGUGG-CGGGcGCCu- -3'
miRNA:   3'- -CCCGC----UCGC--CAGCAUCuGCUC-CGGuu -5'
24417 5' -59.1 NC_005264.1 + 91557 0.66 0.784182
Target:  5'- cGGGCGcGGCGGgg--GGcACGAGGCUu- -3'
miRNA:   3'- -CCCGC-UCGCCagcaUC-UGCUCCGGuu -5'
24417 5' -59.1 NC_005264.1 + 152244 0.66 0.77513
Target:  5'- -cGCGAuauggaucGCGGUCGcGGACuuGGCCAGg -3'
miRNA:   3'- ccCGCU--------CGCCAGCaUCUGcuCCGGUU- -5'
24417 5' -59.1 NC_005264.1 + 34536 0.67 0.765957
Target:  5'- uGGGCGuuGGCGGgguaCGUgaGGgaaGCGGGGCCu- -3'
miRNA:   3'- -CCCGC--UCGCCa---GCA--UC---UGCUCCGGuu -5'
24417 5' -59.1 NC_005264.1 + 153563 0.67 0.765957
Target:  5'- uGGGCGuuGGCGGgguaCGUgaGGgaaGCGGGGCCu- -3'
miRNA:   3'- -CCCGC--UCGCCa---GCA--UC---UGCUCCGGuu -5'
24417 5' -59.1 NC_005264.1 + 156274 0.67 0.756669
Target:  5'- uGGgGGGCGcaucacCGUGGACGAGGCg-- -3'
miRNA:   3'- cCCgCUCGCca----GCAUCUGCUCCGguu -5'
24417 5' -59.1 NC_005264.1 + 37247 0.67 0.756669
Target:  5'- uGGgGGGCGcaucacCGUGGACGAGGCg-- -3'
miRNA:   3'- cCCgCUCGCca----GCAUCUGCUCCGguu -5'
24417 5' -59.1 NC_005264.1 + 150824 0.67 0.747277
Target:  5'- aGGGCG-GCGGUCGccGcCGcAGGUCGu -3'
miRNA:   3'- -CCCGCuCGCCAGCauCuGC-UCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.