miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24419 5' -55.7 NC_005264.1 + 110145 0.66 0.937322
Target:  5'- gGGGGCGGGcGGCGAaacccGCCGCGGcuuUGGg -3'
miRNA:   3'- gCUCCGUCUcUUGCUc----CGGCGCU---AUC- -5'
24419 5' -55.7 NC_005264.1 + 18948 0.66 0.937322
Target:  5'- -cAGcGCAGAuGGGCGAaaugGGCCGCGGa-- -3'
miRNA:   3'- gcUC-CGUCU-CUUGCU----CCGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 155270 0.66 0.937322
Target:  5'- aGGGGCGGAGccgcACGuGGCggaaGCgGGUAGg -3'
miRNA:   3'- gCUCCGUCUCu---UGCuCCGg---CG-CUAUC- -5'
24419 5' -55.7 NC_005264.1 + 131572 0.66 0.937322
Target:  5'- gGA-GCGGGGGGCGuucGCCGCGAa-- -3'
miRNA:   3'- gCUcCGUCUCUUGCuc-CGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 64939 0.66 0.937322
Target:  5'- gCGAGaGCcuuc-GCGAGGCCGCGGa-- -3'
miRNA:   3'- -GCUC-CGucucuUGCUCCGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 36243 0.66 0.937322
Target:  5'- aGGGGCGGAGccgcACGuGGCggaaGCgGGUAGg -3'
miRNA:   3'- gCUCCGUCUCu---UGCuCCGg---CG-CUAUC- -5'
24419 5' -55.7 NC_005264.1 + 12545 0.66 0.937322
Target:  5'- gGA-GCGGGGGGCGuucGCCGCGAa-- -3'
miRNA:   3'- gCUcCGUCUCUUGCuc-CGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 122079 0.66 0.937322
Target:  5'- aGAuGUAGGGGAcauaacauuugcCGAGGCCGUGAa-- -3'
miRNA:   3'- gCUcCGUCUCUU------------GCUCCGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 121911 0.66 0.932402
Target:  5'- cCGGGGCgcggcgcggcggGGAGGGCGAcGGCgagaGCGAcGGa -3'
miRNA:   3'- -GCUCCG------------UCUCUUGCU-CCGg---CGCUaUC- -5'
24419 5' -55.7 NC_005264.1 + 2885 0.66 0.932402
Target:  5'- cCGGGGCgcggcgcggcggGGAGGGCGAcGGCgagaGCGAcGGa -3'
miRNA:   3'- -GCUCCG------------UCUCUUGCU-CCGg---CGCUaUC- -5'
24419 5' -55.7 NC_005264.1 + 50255 0.66 0.932402
Target:  5'- gGuGGCcucuGGGGACGccauGGCCGCGGa-- -3'
miRNA:   3'- gCuCCGu---CUCUUGCu---CCGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 31584 0.66 0.93088
Target:  5'- aGAGGUGGGGcgagucugcucucuGGCGAGGCgGCGc--- -3'
miRNA:   3'- gCUCCGUCUC--------------UUGCUCCGgCGCuauc -5'
24419 5' -55.7 NC_005264.1 + 150611 0.66 0.93088
Target:  5'- aGAGGUGGGGcgagucugcucucuGGCGAGGCgGCGc--- -3'
miRNA:   3'- gCUCCGUCUC--------------UUGCUCCGgCGCuauc -5'
24419 5' -55.7 NC_005264.1 + 126332 0.66 0.927246
Target:  5'- -aAGGCGaacucuGGGAACGA-GCCGCGggAGa -3'
miRNA:   3'- gcUCCGU------CUCUUGCUcCGGCGCuaUC- -5'
24419 5' -55.7 NC_005264.1 + 76632 0.66 0.927246
Target:  5'- aCGAGcacGCAGAGAAgaccauCGAGGCCgauGCGGc-- -3'
miRNA:   3'- -GCUC---CGUCUCUU------GCUCCGG---CGCUauc -5'
24419 5' -55.7 NC_005264.1 + 102819 0.66 0.927246
Target:  5'- aGGGGCguAGAGAAguucuuGGGCCGCGGc-- -3'
miRNA:   3'- gCUCCG--UCUCUUgc----UCCGGCGCUauc -5'
24419 5' -55.7 NC_005264.1 + 7305 0.66 0.927246
Target:  5'- -aAGGCGaacucuGGGAACGA-GCCGCGggAGa -3'
miRNA:   3'- gcUCCGU------CUCUUGCUcCGGCGCuaUC- -5'
24419 5' -55.7 NC_005264.1 + 160891 0.66 0.916226
Target:  5'- uCGGGGgGGGGGGCaacGGCCGCGc--- -3'
miRNA:   3'- -GCUCCgUCUCUUGcu-CCGGCGCuauc -5'
24419 5' -55.7 NC_005264.1 + 55040 0.66 0.916226
Target:  5'- uGAGcGUAGAGAGCGAgGGUCuCGAg-- -3'
miRNA:   3'- gCUC-CGUCUCUUGCU-CCGGcGCUauc -5'
24419 5' -55.7 NC_005264.1 + 41865 0.66 0.916226
Target:  5'- uCGGGGgGGGGGGCaacGGCCGCGc--- -3'
miRNA:   3'- -GCUCCgUCUCUUGcu-CCGGCGCuauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.