miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24420 3' -53.1 NC_005264.1 + 137865 0.66 0.978372
Target:  5'- aCGGGGACaaccgCAGGuCUCgCGGGAGCGa -3'
miRNA:   3'- -GUCCUUGga---GUUCuGGGaGUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 152814 0.66 0.977898
Target:  5'- cCAGGuGACCgauugaugauaGAGGCCCUaGAGAGUGu -3'
miRNA:   3'- -GUCC-UUGGag---------UUCUGGGAgUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 115357 0.66 0.976927
Target:  5'- gAGGGGCCguuaGAGcuacucacgacaacaACCCcCAGGGGCGg -3'
miRNA:   3'- gUCCUUGGag--UUC---------------UGGGaGUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 150230 0.66 0.975926
Target:  5'- gGGGGGCUgc--GGCCCUCcagaGAGAGCu -3'
miRNA:   3'- gUCCUUGGaguuCUGGGAG----UUCUCGc -5'
24420 3' -53.1 NC_005264.1 + 104889 0.66 0.975926
Target:  5'- cCGGGAacagGCCUCAGGccgaacaggcGCCauagCGGGAGUGg -3'
miRNA:   3'- -GUCCU----UGGAGUUC----------UGGga--GUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 31203 0.66 0.975926
Target:  5'- gGGGGGCUgc--GGCCCUCcagaGAGAGCu -3'
miRNA:   3'- gUCCUUGGaguuCUGGGAG----UUCUCGc -5'
24420 3' -53.1 NC_005264.1 + 151375 0.66 0.970437
Target:  5'- gCAGGu-CCUCuauGAaUCUCAAGGGCGu -3'
miRNA:   3'- -GUCCuuGGAGuu-CUgGGAGUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 82581 0.66 0.970437
Target:  5'- gAGcGGCCUCGcucGCCCUCAAG-GCGu -3'
miRNA:   3'- gUCcUUGGAGUuc-UGGGAGUUCuCGC- -5'
24420 3' -53.1 NC_005264.1 + 68013 0.66 0.970437
Target:  5'- gCGGGggUCgggC-AGAUCUUCGAGAGgGg -3'
miRNA:   3'- -GUCCuuGGa--GuUCUGGGAGUUCUCgC- -5'
24420 3' -53.1 NC_005264.1 + 23698 0.67 0.964105
Target:  5'- gCGGGAACgC-CGAccGACCCUCAacgcccaaAGGGCa -3'
miRNA:   3'- -GUCCUUG-GaGUU--CUGGGAGU--------UCUCGc -5'
24420 3' -53.1 NC_005264.1 + 153316 0.67 0.964105
Target:  5'- gAGuAAgUUCGAGGgcCCCUCGAGGGCGc -3'
miRNA:   3'- gUCcUUgGAGUUCU--GGGAGUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 135547 0.67 0.964105
Target:  5'- cUAGGGACCgCGAuGACUUUCGAGaAGCc -3'
miRNA:   3'- -GUCCUUGGaGUU-CUGGGAGUUC-UCGc -5'
24420 3' -53.1 NC_005264.1 + 34289 0.67 0.964105
Target:  5'- gAGuAAgUUCGAGGgcCCCUCGAGGGCGc -3'
miRNA:   3'- gUCcUUgGAGUUCU--GGGAGUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 18003 0.67 0.956882
Target:  5'- cCAGGGACUUCccccGACCCUguuuccgacacCAAGuGCGu -3'
miRNA:   3'- -GUCCUUGGAGuu--CUGGGA-----------GUUCuCGC- -5'
24420 3' -53.1 NC_005264.1 + 72007 0.67 0.956882
Target:  5'- ---aAACCUCGAGAUCgUCAucacGAGCGg -3'
miRNA:   3'- guccUUGGAGUUCUGGgAGUu---CUCGC- -5'
24420 3' -53.1 NC_005264.1 + 107787 0.67 0.954534
Target:  5'- -cGGAugagcuCCUCGAGACCCUCGcucucuacgcucauGAGgGg -3'
miRNA:   3'- guCCUu-----GGAGUUCUGGGAGUu-------------CUCgC- -5'
24420 3' -53.1 NC_005264.1 + 100489 0.67 0.954534
Target:  5'- cCAGGGcCCUgGAGggguugcgggcgaaaGCCCUCAuagacgacAGGGCGg -3'
miRNA:   3'- -GUCCUuGGAgUUC---------------UGGGAGU--------UCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 132627 0.67 0.952922
Target:  5'- -cGGGACCggcgaucgcggUCGGGACgCgggCAGGGGCGg -3'
miRNA:   3'- guCCUUGG-----------AGUUCUGgGa--GUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 13600 0.67 0.952922
Target:  5'- -cGGGACCggcgaucgcggUCGGGACgCgggCAGGGGCGg -3'
miRNA:   3'- guCCUUGG-----------AGUUCUGgGa--GUUCUCGC- -5'
24420 3' -53.1 NC_005264.1 + 108148 0.67 0.948725
Target:  5'- gGGGGGCCgUCGAG--CCUCGcggGGAGCGu -3'
miRNA:   3'- gUCCUUGG-AGUUCugGGAGU---UCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.