miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24420 5' -58.9 NC_005264.1 + 9861 0.66 0.838586
Target:  5'- gGC-CCCUAucGGGCGcGGUcccGGCGcGCc -3'
miRNA:   3'- gCGaGGGGUuuCCUGCaCCA---CCGC-CG- -5'
24420 5' -58.9 NC_005264.1 + 5298 0.66 0.838586
Target:  5'- gGCUgaCCCGuGGGGCG-GGcgacUGGCGGg -3'
miRNA:   3'- gCGAg-GGGUuUCCUGCaCC----ACCGCCg -5'
24420 5' -58.9 NC_005264.1 + 56073 0.66 0.838586
Target:  5'- aCGCcCUCUAGccguAGGACGaGGgaaacaGGCGGCu -3'
miRNA:   3'- -GCGaGGGGUU----UCCUGCaCCa-----CCGCCG- -5'
24420 5' -58.9 NC_005264.1 + 128887 0.66 0.838586
Target:  5'- gGC-CCCUAucGGGCGcGGUcccGGCGcGCc -3'
miRNA:   3'- gCGaGGGGUuuCCUGCaCCA---CCGC-CG- -5'
24420 5' -58.9 NC_005264.1 + 124325 0.66 0.838586
Target:  5'- gGCUgaCCCGuGGGGCG-GGcgacUGGCGGg -3'
miRNA:   3'- gCGAg-GGGUuUCCUGCaCC----ACCGCCg -5'
24420 5' -58.9 NC_005264.1 + 58758 0.66 0.838586
Target:  5'- gCGCUa-UCAGAGGcgcacGCGcGGUGGuCGGCg -3'
miRNA:   3'- -GCGAggGGUUUCC-----UGCaCCACC-GCCG- -5'
24420 5' -58.9 NC_005264.1 + 109597 0.66 0.836192
Target:  5'- aCGCgCCCgCGGGGcacggaaagcaaauGGCGUGGgcgGGgGGCg -3'
miRNA:   3'- -GCGaGGG-GUUUC--------------CUGCACCa--CCgCCG- -5'
24420 5' -58.9 NC_005264.1 + 150540 0.66 0.833783
Target:  5'- gGCggCUCCAGGcucGGGCGgggagggccguuggGGUGGgGGCg -3'
miRNA:   3'- gCGa-GGGGUUU---CCUGCa-------------CCACCgCCG- -5'
24420 5' -58.9 NC_005264.1 + 20298 0.66 0.833783
Target:  5'- uGCggCCCCGAGGGGCugaggucgcuguaucGUGGgcacCGGCa -3'
miRNA:   3'- gCGa-GGGGUUUCCUG---------------CACCacc-GCCG- -5'
24420 5' -58.9 NC_005264.1 + 31513 0.66 0.833783
Target:  5'- gGCggCUCCAGGcucGGGCGgggagggccguuggGGUGGgGGCg -3'
miRNA:   3'- gCGa-GGGGUUU---CCUGCa-------------CCACCgCCG- -5'
24420 5' -58.9 NC_005264.1 + 139077 0.66 0.830547
Target:  5'- cCGUUCCCCAaacuuggucuAAGGucugcaccgcgACGUGG-GGCgaacacGGCa -3'
miRNA:   3'- -GCGAGGGGU----------UUCC-----------UGCACCaCCG------CCG- -5'
24420 5' -58.9 NC_005264.1 + 18616 0.66 0.813966
Target:  5'- uGCUCaagagugCgAAAGuGACGUGGUGG-GGUg -3'
miRNA:   3'- gCGAGg------GgUUUC-CUGCACCACCgCCG- -5'
24420 5' -58.9 NC_005264.1 + 87641 0.66 0.796762
Target:  5'- uGCagCCgCGuGGGGCGcgGGaccUGGCGGCa -3'
miRNA:   3'- gCGa-GGgGUuUCCUGCa-CC---ACCGCCG- -5'
24420 5' -58.9 NC_005264.1 + 93000 0.67 0.791489
Target:  5'- uGCUCCCaagcAGGGCGgccuucaccccGGCGGCg -3'
miRNA:   3'- gCGAGGGguu-UCCUGCacca-------CCGCCG- -5'
24420 5' -58.9 NC_005264.1 + 19006 0.67 0.787946
Target:  5'- gGCguaCCCAAAcaagauaagcGGGCGUGaUGGaCGGCa -3'
miRNA:   3'- gCGag-GGGUUU----------CCUGCACcACC-GCCG- -5'
24420 5' -58.9 NC_005264.1 + 34482 0.67 0.778999
Target:  5'- gCGCUUCa-GGAGGACGUucggcgggaauGGggGGCGGUg -3'
miRNA:   3'- -GCGAGGggUUUCCUGCA-----------CCa-CCGCCG- -5'
24420 5' -58.9 NC_005264.1 + 76393 0.67 0.778999
Target:  5'- uGUUCgCCUcGAGGGCGUGGcacauagGGCgcccGGCg -3'
miRNA:   3'- gCGAG-GGGuUUCCUGCACCa------CCG----CCG- -5'
24420 5' -58.9 NC_005264.1 + 42379 0.67 0.769926
Target:  5'- uGCgaUCUUCGAGGcGACGUGGcGGUGGa -3'
miRNA:   3'- gCG--AGGGGUUUC-CUGCACCaCCGCCg -5'
24420 5' -58.9 NC_005264.1 + 111398 0.67 0.769926
Target:  5'- --aUCgCCAacAAGGuCGUGGagGGCGGCc -3'
miRNA:   3'- gcgAGgGGU--UUCCuGCACCa-CCGCCG- -5'
24420 5' -58.9 NC_005264.1 + 155110 0.67 0.760739
Target:  5'- cCGUUUCC--GAGGACG-GGaUGGCGGa -3'
miRNA:   3'- -GCGAGGGguUUCCUGCaCC-ACCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.