miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 3' -55 NC_005264.1 + 3458 0.65 0.963421
Target:  5'- cGCCaCGAggGUCUCGGGGgcgaugggcuuGCCGcCGc -3'
miRNA:   3'- aCGGcGCUagCAGAGCCUU-----------UGGCaGC- -5'
24421 3' -55 NC_005264.1 + 3648 0.68 0.901164
Target:  5'- cGUCGCGAUggccgcCGUCUCGacGAugggcGGCCGUCu -3'
miRNA:   3'- aCGGCGCUA------GCAGAGC--CU-----UUGGCAGc -5'
24421 3' -55 NC_005264.1 + 4872 0.68 0.906121
Target:  5'- cGCUGCGAggaagauagggGUCUcCGGGGACCG-CGg -3'
miRNA:   3'- aCGGCGCUag---------CAGA-GCCUUUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 5012 0.66 0.952471
Target:  5'- cGCCGgGGUCGcCgCGGAGuaCGUCa -3'
miRNA:   3'- aCGGCgCUAGCaGaGCCUUugGCAGc -5'
24421 3' -55 NC_005264.1 + 5153 0.67 0.934731
Target:  5'- cGUCGCcGUCGUCgUCGGugccGGCCucGUCGg -3'
miRNA:   3'- aCGGCGcUAGCAG-AGCCu---UUGG--CAGC- -5'
24421 3' -55 NC_005264.1 + 5154 0.72 0.687796
Target:  5'- gGCCGCGccgcAUCGUCcgaagccuauUCGGAGGCCcUCGc -3'
miRNA:   3'- aCGGCGC----UAGCAG----------AGCCUUUGGcAGC- -5'
24421 3' -55 NC_005264.1 + 5530 0.67 0.929718
Target:  5'- aGCCGCGG-CGUCUCGcgcGGAGCgGg-- -3'
miRNA:   3'- aCGGCGCUaGCAGAGC---CUUUGgCagc -5'
24421 3' -55 NC_005264.1 + 6259 0.72 0.687796
Target:  5'- cGUCGCGGUCGUCgcc---GCCGUCGg -3'
miRNA:   3'- aCGGCGCUAGCAGagccuuUGGCAGC- -5'
24421 3' -55 NC_005264.1 + 8319 0.68 0.907337
Target:  5'- cGCCGCGGcgucgccgUCGUCcccuaGGGuuugagggggcGACCGUCGc -3'
miRNA:   3'- aCGGCGCU--------AGCAGag---CCU-----------UUGGCAGC- -5'
24421 3' -55 NC_005264.1 + 18145 0.68 0.88814
Target:  5'- uUGCCGUGGucgcaacugUCGUCgUCGGcgccACUGUCGu -3'
miRNA:   3'- -ACGGCGCU---------AGCAG-AGCCuu--UGGCAGC- -5'
24421 3' -55 NC_005264.1 + 29465 0.66 0.942719
Target:  5'- cGCCGCGAugacucucgccgagUCGUCgaGGAgGGCCG-CGg -3'
miRNA:   3'- aCGGCGCU--------------AGCAGagCCU-UUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 29677 0.66 0.95634
Target:  5'- aUGCCGCgucGAUCGUCcCGGuga-UGUCa -3'
miRNA:   3'- -ACGGCG---CUAGCAGaGCCuuugGCAGc -5'
24421 3' -55 NC_005264.1 + 29893 0.66 0.948379
Target:  5'- uUGCCGCGAaggCGUg-CGGcgcuaccCCGUCGg -3'
miRNA:   3'- -ACGGCGCUa--GCAgaGCCuuu----GGCAGC- -5'
24421 3' -55 NC_005264.1 + 30217 0.66 0.952471
Target:  5'- cGaCCGCGAUCG-C-CGGuc-CCGUCu -3'
miRNA:   3'- aC-GGCGCUAGCaGaGCCuuuGGCAGc -5'
24421 3' -55 NC_005264.1 + 30380 0.77 0.452211
Target:  5'- cGCCGCGucgCGUCUCGGcggcGGCgGUCGc -3'
miRNA:   3'- aCGGCGCua-GCAGAGCCu---UUGgCAGC- -5'
24421 3' -55 NC_005264.1 + 30425 0.66 0.948379
Target:  5'- aGCUGCGGcggaggagGUCUCGGGggAGCCG-CGg -3'
miRNA:   3'- aCGGCGCUag------CAGAGCCU--UUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 30866 0.67 0.934731
Target:  5'- cGCCGCccGGUaggcaacggCGUCucgaUCGGGGACgCGUCGg -3'
miRNA:   3'- aCGGCG--CUA---------GCAG----AGCCUUUG-GCAGC- -5'
24421 3' -55 NC_005264.1 + 30941 0.67 0.929204
Target:  5'- cGuCCG-GGUCGUCaUCGGcgaccccGAACCGUCu -3'
miRNA:   3'- aC-GGCgCUAGCAG-AGCC-------UUUGGCAGc -5'
24421 3' -55 NC_005264.1 + 35001 0.68 0.907337
Target:  5'- gUGCCGCGAgCGgcgCUCgaagaGGAGcgcugGCCGUCc -3'
miRNA:   3'- -ACGGCGCUaGCa--GAG-----CCUU-----UGGCAGc -5'
24421 3' -55 NC_005264.1 + 35762 0.66 0.959276
Target:  5'- gGCCGCGA-CGUgggugaagaggCGGAGggcgcgguggcGCCGUCGu -3'
miRNA:   3'- aCGGCGCUaGCAga---------GCCUU-----------UGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.