miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 3' -55 NC_005264.1 + 110966 0.66 0.952471
Target:  5'- aUGaCCGC---CGUCUCgcccgaGGAGACCGUCu -3'
miRNA:   3'- -AC-GGCGcuaGCAGAG------CCUUUGGCAGc -5'
24421 3' -55 NC_005264.1 + 78000 0.66 0.952471
Target:  5'- gGCCGCGAUCG---CGGgcGaucaCGUCGa -3'
miRNA:   3'- aCGGCGCUAGCagaGCCuuUg---GCAGC- -5'
24421 3' -55 NC_005264.1 + 5012 0.66 0.952471
Target:  5'- cGCCGgGGUCGcCgCGGAGuaCGUCa -3'
miRNA:   3'- aCGGCgCUAGCaGaGCCUUugGCAGc -5'
24421 3' -55 NC_005264.1 + 30425 0.66 0.948379
Target:  5'- aGCUGCGGcggaggagGUCUCGGGggAGCCG-CGg -3'
miRNA:   3'- aCGGCGCUag------CAGAGCCU--UUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 149452 0.66 0.948379
Target:  5'- aGCUGCGGcggaggagGUCUCGGGggAGCCG-CGg -3'
miRNA:   3'- aCGGCGCUag------CAGAGCCU--UUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 63057 0.66 0.948379
Target:  5'- gGCCGCcuuGAucUCGgucuccagCUCGGcgaGGGCCGUCGc -3'
miRNA:   3'- aCGGCG---CU--AGCa-------GAGCC---UUUGGCAGC- -5'
24421 3' -55 NC_005264.1 + 29893 0.66 0.948379
Target:  5'- uUGCCGCGAaggCGUg-CGGcgcuaccCCGUCGg -3'
miRNA:   3'- -ACGGCGCUa--GCAgaGCCuuu----GGCAGC- -5'
24421 3' -55 NC_005264.1 + 67199 0.66 0.94406
Target:  5'- aUGaCGCGG-CGcCUauagUGGGAACCGUCGg -3'
miRNA:   3'- -ACgGCGCUaGCaGA----GCCUUUGGCAGC- -5'
24421 3' -55 NC_005264.1 + 29465 0.66 0.942719
Target:  5'- cGCCGCGAugacucucgccgagUCGUCgaGGAgGGCCG-CGg -3'
miRNA:   3'- aCGGCGCU--------------AGCAGagCCU-UUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 71516 0.67 0.939511
Target:  5'- gGCCGCGGUgCGcCUCGacuuGGAGCUGUa- -3'
miRNA:   3'- aCGGCGCUA-GCaGAGC----CUUUGGCAgc -5'
24421 3' -55 NC_005264.1 + 124180 0.67 0.934731
Target:  5'- cGUCGCcGUCGUCgUCGGugccGGCCucGUCGg -3'
miRNA:   3'- aCGGCGcUAGCAG-AGCCu---UUGG--CAGC- -5'
24421 3' -55 NC_005264.1 + 30866 0.67 0.934731
Target:  5'- cGCCGCccGGUaggcaacggCGUCucgaUCGGGGACgCGUCGg -3'
miRNA:   3'- aCGGCG--CUA---------GCAG----AGCCUUUG-GCAGC- -5'
24421 3' -55 NC_005264.1 + 149892 0.67 0.934731
Target:  5'- cGCCGCccGGUaggcaacggCGUCucgaUCGGGGACgCGUCGg -3'
miRNA:   3'- aCGGCG--CUA---------GCAG----AGCCUUUG-GCAGC- -5'
24421 3' -55 NC_005264.1 + 5153 0.67 0.934731
Target:  5'- cGUCGCcGUCGUCgUCGGugccGGCCucGUCGg -3'
miRNA:   3'- aCGGCGcUAGCAG-AGCCu---UUGG--CAGC- -5'
24421 3' -55 NC_005264.1 + 36673 0.67 0.929718
Target:  5'- gGCCGCGAccaCGUUUCGucGGCUcaGUCGg -3'
miRNA:   3'- aCGGCGCUa--GCAGAGCcuUUGG--CAGC- -5'
24421 3' -55 NC_005264.1 + 5530 0.67 0.929718
Target:  5'- aGCCGCGG-CGUCUCGcgcGGAGCgGg-- -3'
miRNA:   3'- aCGGCGCUaGCAGAGC---CUUUGgCagc -5'
24421 3' -55 NC_005264.1 + 155699 0.67 0.929718
Target:  5'- gGCCGCGAccaCGUUUCGucGGCUcaGUCGg -3'
miRNA:   3'- aCGGCGCUa--GCAGAGCcuUUGG--CAGC- -5'
24421 3' -55 NC_005264.1 + 30941 0.67 0.929204
Target:  5'- cGuCCG-GGUCGUCaUCGGcgaccccGAACCGUCu -3'
miRNA:   3'- aC-GGCgCUAGCAG-AGCC-------UUUGGCAGc -5'
24421 3' -55 NC_005264.1 + 149968 0.67 0.929204
Target:  5'- cGuCCG-GGUCGUCaUCGGcgaccccGAACCGUCu -3'
miRNA:   3'- aC-GGCgCUAGCAG-AGCC-------UUUGGCAGc -5'
24421 3' -55 NC_005264.1 + 63674 0.67 0.918993
Target:  5'- cGCCGCGAgugaCGUCcccCGcGAugUCGUCGa -3'
miRNA:   3'- aCGGCGCUa---GCAGa--GC-CUuuGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.