miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 157347 0.66 0.64889
Target:  5'- gGCCGACGaggguuggcggGCCCUGGccgugaugcugGGCGGCgggGCGGu -3'
miRNA:   3'- -UGGCUGC-----------UGGGGCU-----------UCGCCGg--CGCCu -5'
24421 5' -62.9 NC_005264.1 + 7577 0.66 0.64889
Target:  5'- cGCCGcCuACCCCGc-GCcGCUGCGGAg -3'
miRNA:   3'- -UGGCuGcUGGGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 100089 0.66 0.638295
Target:  5'- aGCaUGGCGGCCgCGggGCucagcgacgacgcGGuuGCGGGa -3'
miRNA:   3'- -UG-GCUGCUGGgGCuuCG-------------CCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 113261 0.66 0.629622
Target:  5'- cGCCGGCGGCgUgcgccgagaaggUGAAGCGGUCGCu-- -3'
miRNA:   3'- -UGGCUGCUGgG------------GCUUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 103070 0.66 0.619987
Target:  5'- -gCGACGAguCCCgCGAAGCGuCCGCGu- -3'
miRNA:   3'- ugGCUGCU--GGG-GCUUCGCcGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 42361 0.66 0.619987
Target:  5'- cGCCGGCGAUggCCGguGCuGGCuccCGCGGAg -3'
miRNA:   3'- -UGGCUGCUGg-GGCuuCG-CCG---GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 39955 0.66 0.65851
Target:  5'- -aCGGCGACCUCGGcuGCGaGuCUGCGGu -3'
miRNA:   3'- ugGCUGCUGGGGCUu-CGC-C-GGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 24230 0.66 0.65851
Target:  5'- cACCuGACGAugacuugcaCCCCaccGCuGCCGCGGAa -3'
miRNA:   3'- -UGG-CUGCU---------GGGGcuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 99803 0.66 0.639258
Target:  5'- gGCCGAggcgauggucgcCGACCCCGggGUaaGGCU--GGAg -3'
miRNA:   3'- -UGGCU------------GCUGGGGCuuCG--CCGGcgCCU- -5'
24421 5' -62.9 NC_005264.1 + 106920 0.66 0.628658
Target:  5'- aGCCGGgucacuuuuuccuCGACagCUGcGGCGGCCGCaGGAu -3'
miRNA:   3'- -UGGCU-------------GCUGg-GGCuUCGCCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 37168 0.66 0.665232
Target:  5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3'
miRNA:   3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 68043 0.66 0.619987
Target:  5'- aACCGcuucCGugCCCGAcgaGGCGGCgagauCGgGGAa -3'
miRNA:   3'- -UGGCu---GCugGGGCU---UCGCCG-----GCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 129031 0.66 0.64889
Target:  5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3'
miRNA:   3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5'
24421 5' -62.9 NC_005264.1 + 61489 0.66 0.629622
Target:  5'- cGCCGACGcGCCCCGcggucucggcuAGCG-CCGCGc- -3'
miRNA:   3'- -UGGCUGC-UGGGGCu----------UCGCcGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 41614 0.66 0.629622
Target:  5'- cGCUGACGAgCUCguaGAAGCGGCUggccagauGCGGc -3'
miRNA:   3'- -UGGCUGCUgGGG---CUUCGCCGG--------CGCCu -5'
24421 5' -62.9 NC_005264.1 + 86157 0.66 0.629622
Target:  5'- gUgGGCGACagCCu-GGUGGCCGUGGAa -3'
miRNA:   3'- uGgCUGCUGg-GGcuUCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 9327 0.66 0.639258
Target:  5'- uCCGuuCGuCCCCGccagGGGCGGCCGCc-- -3'
miRNA:   3'- uGGCu-GCuGGGGC----UUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 162650 0.66 0.639258
Target:  5'- uUCGA-GGCUCgGAAGCGcGCCgGCGGGu -3'
miRNA:   3'- uGGCUgCUGGGgCUUCGC-CGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 64415 0.66 0.629622
Target:  5'- gGCCGACG-CCgCGGgcacGGCGaugacgucuGCCGCGGc -3'
miRNA:   3'- -UGGCUGCuGGgGCU----UCGC---------CGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 161388 0.66 0.619987
Target:  5'- cGCCGGCGAUggCCGguGCuGGCuccCGCGGAg -3'
miRNA:   3'- -UGGCUGCUGg-GGCuuCG-CCG---GCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.