miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 118047 0.66 0.65851
Target:  5'- uGCCGcgGCGACCgCGGcgucGGCaacgaucGCCGCGGGc -3'
miRNA:   3'- -UGGC--UGCUGGgGCU----UCGc------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 65161 0.66 0.668111
Target:  5'- cACCGcgGCGGCgCCCucucuGGCcauGGCCGCGGc -3'
miRNA:   3'- -UGGC--UGCUG-GGGcu---UCG---CCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 160358 0.67 0.562564
Target:  5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3'
miRNA:   3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 36546 0.67 0.610361
Target:  5'- gGCCG-CG-CgCCCGaAAGCGGCauggccgccucCGCGGAc -3'
miRNA:   3'- -UGGCuGCuG-GGGC-UUCGCCG-----------GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 104116 0.67 0.610361
Target:  5'- -gCGACGuCCCCcuGGUGGCCGCc-- -3'
miRNA:   3'- ugGCUGCuGGGGcuUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 132120 0.67 0.600749
Target:  5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3'
miRNA:   3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 35263 0.67 0.591157
Target:  5'- gACCGAaaacacUGGCgCgGgcGCGGCCGUGGu -3'
miRNA:   3'- -UGGCU------GCUGgGgCuuCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 101036 0.67 0.610361
Target:  5'- cCCGGCGAUgCCc--GCGGCCcgGUGGAg -3'
miRNA:   3'- uGGCUGCUGgGGcuuCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 134835 0.67 0.610361
Target:  5'- cCCGAcCGACCUgGAucgauG-GGCCGCGGc -3'
miRNA:   3'- uGGCU-GCUGGGgCUu----CgCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 28490 0.67 0.610361
Target:  5'- uCCGACGAUCCCGuAGC-GCUGCc-- -3'
miRNA:   3'- uGGCUGCUGGGGCuUCGcCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 54240 0.67 0.607475
Target:  5'- --aGGCGGCCCCGcgcgccaacgugucGAGUGGgaGCGGGg -3'
miRNA:   3'- uggCUGCUGGGGC--------------UUCGCCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 33872 0.67 0.562564
Target:  5'- -aCGugGAgcgucCgCUCGAGGCGGCgGUGGAa -3'
miRNA:   3'- ugGCugCU-----G-GGGCUUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 140555 0.67 0.572059
Target:  5'- uACCGACGACCCUGcuGGCGaGaCaaCGGAa -3'
miRNA:   3'- -UGGCUGCUGGGGCu-UCGC-C-GgcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 40786 0.67 0.572059
Target:  5'- uCCG-CGGCgCCGAgAGCGgagccgcuuGCCGCGGGg -3'
miRNA:   3'- uGGCuGCUGgGGCU-UCGC---------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 132630 0.67 0.580637
Target:  5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3'
miRNA:   3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5'
24421 5' -62.9 NC_005264.1 + 22049 0.67 0.581592
Target:  5'- gACCGACG-CCuuGGacgguAGCGccGCCGcCGGAa -3'
miRNA:   3'- -UGGCUGCuGGggCU-----UCGC--CGGC-GCCU- -5'
24421 5' -62.9 NC_005264.1 + 123771 0.67 0.581592
Target:  5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3'
miRNA:   3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 161912 0.67 0.581592
Target:  5'- cCCGACGAgcccuCUCCGAccuuccccccAGCGGCCcGCGa- -3'
miRNA:   3'- uGGCUGCU-----GGGGCU----------UCGCCGG-CGCcu -5'
24421 5' -62.9 NC_005264.1 + 18055 0.67 0.591157
Target:  5'- -gCGGCGGCgCCGcGAGCcagGGCgCGCGGGc -3'
miRNA:   3'- ugGCUGCUGgGGC-UUCG---CCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 66534 0.67 0.591157
Target:  5'- -aCGACGACCgCGuuGCGGgCGuCGGc -3'
miRNA:   3'- ugGCUGCUGGgGCuuCGCCgGC-GCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.