miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 36509 0.68 0.534357
Target:  5'- aGCgCG-CGGCCUCGAcgaGGCGGgCGCaGGAg -3'
miRNA:   3'- -UG-GCuGCUGGGGCU---UCGCCgGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 154844 0.68 0.534357
Target:  5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3'
miRNA:   3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5'
24421 5' -62.9 NC_005264.1 + 143654 0.68 0.49757
Target:  5'- gGCCGACGgucgGCCCCGGAGCcaucauccuGGuuGUGa- -3'
miRNA:   3'- -UGGCUGC----UGGGGCUUCG---------CCggCGCcu -5'
24421 5' -62.9 NC_005264.1 + 119917 0.68 0.525063
Target:  5'- gACUGgguguACGGCCCCGugucGCgGGCCGCuGGGg -3'
miRNA:   3'- -UGGC-----UGCUGGGGCuu--CG-CCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 126095 0.68 0.515831
Target:  5'- cGCCGGcCGGCgCCGucGC-GCUGCGGGg -3'
miRNA:   3'- -UGGCU-GCUGgGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 109882 0.68 0.553112
Target:  5'- aGCgGAauACCCCGcGGCGcaaugcGCCGCGGGc -3'
miRNA:   3'- -UGgCUgcUGGGGCuUCGC------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 136560 0.68 0.49757
Target:  5'- aGCCGaucGCGAUCCaGGAaCGcGCCGCGGAa -3'
miRNA:   3'- -UGGC---UGCUGGGgCUUcGC-CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 120536 0.68 0.553112
Target:  5'- uGCCGGCaGCCCUGcgaCGGCCcCGGAa -3'
miRNA:   3'- -UGGCUGcUGGGGCuucGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 146346 0.68 0.496664
Target:  5'- cGCCGGCgugccucGACCCCGcAGGCcaCCGCGGc -3'
miRNA:   3'- -UGGCUG-------CUGGGGC-UUCGccGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 152667 0.68 0.553112
Target:  5'- uGCCGACGACaagauacucgCCGAGGCcuGGaCGCGGu -3'
miRNA:   3'- -UGGCUGCUGg---------GGCUUCG--CCgGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 141467 0.67 0.600749
Target:  5'- -gCGGCGggGCCucuuuccaccggCCGAGGCGGCC-CGGGa -3'
miRNA:   3'- ugGCUGC--UGG------------GGCUUCGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 110517 0.67 0.587328
Target:  5'- cGCCcaGCGACCCUGAAGCuGCagaacuuuauaagGCGGAg -3'
miRNA:   3'- -UGGc-UGCUGGGGCUUCGcCGg------------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 13093 0.67 0.600749
Target:  5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3'
miRNA:   3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 145481 0.67 0.600749
Target:  5'- gACCG-CG-CCgCCGccAGCuGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCuGG-GGCu-UCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 54240 0.67 0.607475
Target:  5'- --aGGCGGCCCCGcgcgccaacgugucGAGUGGgaGCGGGg -3'
miRNA:   3'- uggCUGCUGGGGC--------------UUCGCCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 28490 0.67 0.610361
Target:  5'- uCCGACGAUCCCGuAGC-GCUGCc-- -3'
miRNA:   3'- uGGCUGCUGGGGCuUCGcCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 104116 0.67 0.610361
Target:  5'- -gCGACGuCCCCcuGGUGGCCGCc-- -3'
miRNA:   3'- ugGCUGCuGGGGcuUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 132120 0.67 0.600749
Target:  5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3'
miRNA:   3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 36546 0.67 0.610361
Target:  5'- gGCCG-CG-CgCCCGaAAGCGGCauggccgccucCGCGGAc -3'
miRNA:   3'- -UGGCuGCuG-GGGC-UUCGCCG-----------GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 33872 0.67 0.562564
Target:  5'- -aCGugGAgcgucCgCUCGAGGCGGCgGUGGAa -3'
miRNA:   3'- ugGCugCU-----G-GGGCUUCGCCGgCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.