miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 57991 0.72 0.307232
Target:  5'- cGCgCGGCGGCCgUGGcucAGCGGCCccgGCGGAc -3'
miRNA:   3'- -UG-GCUGCUGGgGCU---UCGCCGG---CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 161613 0.72 0.307232
Target:  5'- cACCGuGCGggauguugugcaACCCCGcAGCcauGGCCGCGGAc -3'
miRNA:   3'- -UGGC-UGC------------UGGGGCuUCG---CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 61775 0.72 0.320088
Target:  5'- uUUGGCGACCCUGAucgacucgagcAGCuccaccgGGCCGCGGGc -3'
miRNA:   3'- uGGCUGCUGGGGCU-----------UCG-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 13299 0.72 0.320775
Target:  5'- gUCGugGAgcuCCCCGGAGgaCGGCCGCGcGGa -3'
miRNA:   3'- uGGCugCU---GGGGCUUC--GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 132326 0.72 0.320775
Target:  5'- gUCGugGAgcuCCCCGGAGgaCGGCCGCGcGGa -3'
miRNA:   3'- uGGCugCU---GGGGCUUC--GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 100487 0.72 0.327713
Target:  5'- gGCC-AgGGCCCUGGAGgGGuuGCGGGc -3'
miRNA:   3'- -UGGcUgCUGGGGCUUCgCCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 103125 0.72 0.341919
Target:  5'- uCCGGCGcgguaGCCgCCGgcGCGGCgCGCGGc -3'
miRNA:   3'- uGGCUGC-----UGG-GGCuuCGCCG-GCGCCu -5'
24421 5' -62.9 NC_005264.1 + 36410 0.71 0.348456
Target:  5'- aGCUGACGugaggcGCCCC-AAGUaccugcaGGCCGCGGAg -3'
miRNA:   3'- -UGGCUGC------UGGGGcUUCG-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 99622 0.71 0.362545
Target:  5'- gGCCGuuaugcggaaaGACCCgGAgacGGCGGCCGUGGc -3'
miRNA:   3'- -UGGCug---------CUGGGgCU---UCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 48879 0.71 0.364051
Target:  5'- cGCCGgugccuucACGuCCgaGAAGCGGCaCGCGGAa -3'
miRNA:   3'- -UGGC--------UGCuGGggCUUCGCCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 120740 0.71 0.385585
Target:  5'- uGCCGGCGACUgCGAcgacagggauaucccGGCGcagcugacgccacgcGCCGCGGGc -3'
miRNA:   3'- -UGGCUGCUGGgGCU---------------UCGC---------------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 21242 0.71 0.387155
Target:  5'- cGuuGACGACggCUCGAGuguGCGcGCCGCGGAg -3'
miRNA:   3'- -UggCUGCUG--GGGCUU---CGC-CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 56823 0.7 0.395068
Target:  5'- uGCgCGGCGGCCCUagcuAGCGGCuCGUGGc -3'
miRNA:   3'- -UG-GCUGCUGGGGcu--UCGCCG-GCGCCu -5'
24421 5' -62.9 NC_005264.1 + 77048 0.7 0.395068
Target:  5'- -gCGACGACCCgGAAGaGGCgCGCGa- -3'
miRNA:   3'- ugGCUGCUGGGgCUUCgCCG-GCGCcu -5'
24421 5' -62.9 NC_005264.1 + 42766 0.7 0.402279
Target:  5'- uGCCGAgCGACCCgGGuGGCcaguuacGGCCgGCGGAa -3'
miRNA:   3'- -UGGCU-GCUGGGgCU-UCG-------CCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 161792 0.7 0.402279
Target:  5'- uGCCGAgCGACCCgGGuGGCcaguuacGGCCgGCGGAa -3'
miRNA:   3'- -UGGCU-GCUGGGgCU-UCG-------CCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 156596 0.7 0.402279
Target:  5'- gACCG-CGACggaggcggcaaguCUCGcGGCGGCCGCGGc -3'
miRNA:   3'- -UGGCuGCUG-------------GGGCuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 37569 0.7 0.402279
Target:  5'- gACCG-CGACggaggcggcaaguCUCGcGGCGGCCGCGGc -3'
miRNA:   3'- -UGGCuGCUG-------------GGGCuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 16566 0.7 0.403085
Target:  5'- gUgGGCGGCgCCGggGCGGCgGCGc- -3'
miRNA:   3'- uGgCUGCUGgGGCuuCGCCGgCGCcu -5'
24421 5' -62.9 NC_005264.1 + 17996 0.7 0.411204
Target:  5'- aGCCGGCaccGGCUCUGAcggcggcgGGuCGGCCGCGGu -3'
miRNA:   3'- -UGGCUG---CUGGGGCU--------UC-GCCGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.