miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 125029 0.7 0.426906
Target:  5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3'
miRNA:   3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 6002 0.7 0.426906
Target:  5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3'
miRNA:   3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 90636 0.7 0.427742
Target:  5'- -aCGcACaACCCCGAAG-GGCgCGCGGAg -3'
miRNA:   3'- ugGC-UGcUGGGGCUUCgCCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 146954 0.7 0.436158
Target:  5'- gGCUgGAUGGCgCUGAGGCcgcaGGCUGCGGAg -3'
miRNA:   3'- -UGG-CUGCUGgGGCUUCG----CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 157582 0.7 0.439551
Target:  5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 38555 0.7 0.439551
Target:  5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 129035 0.69 0.45327
Target:  5'- uGCCGGCGAgCCgGuccaAAGCGGCgugCGCGGc -3'
miRNA:   3'- -UGGCUGCUgGGgC----UUCGCCG---GCGCCu -5'
24421 5' -62.9 NC_005264.1 + 19422 0.69 0.470742
Target:  5'- -gCGA-GGCgCCGGGuGUGGCCGCGGGg -3'
miRNA:   3'- ugGCUgCUGgGGCUU-CGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 2406 0.69 0.479605
Target:  5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 121433 0.69 0.479605
Target:  5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 70037 0.69 0.479605
Target:  5'- cACUGGCGGCCUCGuccucuuuaGGGgGGUCGgGGAc -3'
miRNA:   3'- -UGGCUGCUGGGGC---------UUCgCCGGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 142933 0.69 0.479605
Target:  5'- gGCaCGGCGccaccacaaaGCaCCCGAAauggcuagcGCGGCCGCGGc -3'
miRNA:   3'- -UG-GCUGC----------UG-GGGCUU---------CGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 83116 0.69 0.488548
Target:  5'- cGCCGACGGgCgCCaa---GGCCGCGGAg -3'
miRNA:   3'- -UGGCUGCUgG-GGcuucgCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 75389 0.69 0.488548
Target:  5'- gUCGugGugcgcGCCaCCGucugcGCGGCCGCGGGc -3'
miRNA:   3'- uGGCugC-----UGG-GGCuu---CGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 101422 0.69 0.488548
Target:  5'- cGCCGAaagcauacgaGACCCgGAAGCGGCgaaGGAg -3'
miRNA:   3'- -UGGCUg---------CUGGGgCUUCGCCGgcgCCU- -5'
24421 5' -62.9 NC_005264.1 + 49155 0.69 0.488548
Target:  5'- --aGACauGCCCCacAGCGGCCGCGGc -3'
miRNA:   3'- uggCUGc-UGGGGcuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 156596 0.69 0.488548
Target:  5'- gACUGAgGAUCCgCGggGCcGCCGCaGAa -3'
miRNA:   3'- -UGGCUgCUGGG-GCuuCGcCGGCGcCU- -5'
24421 5' -62.9 NC_005264.1 + 146346 0.68 0.496664
Target:  5'- cGCCGGCgugccucGACCCCGcAGGCcaCCGCGGc -3'
miRNA:   3'- -UGGCUG-------CUGGGGC-UUCGccGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 143654 0.68 0.49757
Target:  5'- gGCCGACGgucgGCCCCGGAGCcaucauccuGGuuGUGa- -3'
miRNA:   3'- -UGGCUGC----UGGGGCUUCG---------CCggCGCcu -5'
24421 5' -62.9 NC_005264.1 + 136560 0.68 0.49757
Target:  5'- aGCCGaucGCGAUCCaGGAaCGcGCCGCGGAa -3'
miRNA:   3'- -UGGC---UGCUGGGgCUUcGC-CGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.