miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 143654 0.68 0.49757
Target:  5'- gGCCGACGgucgGCCCCGGAGCcaucauccuGGuuGUGa- -3'
miRNA:   3'- -UGGCUGC----UGGGGCUUCG---------CCggCGCcu -5'
24421 5' -62.9 NC_005264.1 + 106522 0.68 0.49757
Target:  5'- uGCgCGACGGCggcagcGCGGCCGCGGAg -3'
miRNA:   3'- -UG-GCUGCUGgggcuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 145975 0.68 0.506665
Target:  5'- cGCCGGCGcgaauacgaACUgCGcGGCGGCUgGCGGAa -3'
miRNA:   3'- -UGGCUGC---------UGGgGCuUCGCCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 103044 0.68 0.515831
Target:  5'- -aCGuACGGCUCCGcGGCggacacGGCCGUGGAc -3'
miRNA:   3'- ugGC-UGCUGGGGCuUCG------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 126095 0.68 0.515831
Target:  5'- cGCCGGcCGGCgCCGucGC-GCUGCGGGg -3'
miRNA:   3'- -UGGCU-GCUGgGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 7068 0.68 0.515831
Target:  5'- cGCCGGcCGGCgCCGucGC-GCUGCGGGg -3'
miRNA:   3'- -UGGCU-GCUGgGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 105227 0.68 0.525063
Target:  5'- -gUGuACGACUgCG-AGCaGGCCGCGGAg -3'
miRNA:   3'- ugGC-UGCUGGgGCuUCG-CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 891 0.68 0.525063
Target:  5'- gACUGgguguACGGCCCCGugucGCgGGCCGCuGGGg -3'
miRNA:   3'- -UGGC-----UGCUGGGGCuu--CG-CCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 48730 0.68 0.525063
Target:  5'- gGCCGGCGAUgCUGAugaAGCGGCuCGUaacucagagaGGAg -3'
miRNA:   3'- -UGGCUGCUGgGGCU---UCGCCG-GCG----------CCU- -5'
24421 5' -62.9 NC_005264.1 + 119917 0.68 0.525063
Target:  5'- gACUGgguguACGGCCCCGugucGCgGGCCGCuGGGg -3'
miRNA:   3'- -UGGC-----UGCUGGGGCuu--CG-CCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 154844 0.68 0.534357
Target:  5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3'
miRNA:   3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5'
24421 5' -62.9 NC_005264.1 + 127826 0.68 0.534357
Target:  5'- cCCGACagcguuGCCuCCGcGGCGGCCgGCGGu -3'
miRNA:   3'- uGGCUGc-----UGG-GGCuUCGCCGG-CGCCu -5'
24421 5' -62.9 NC_005264.1 + 79966 0.68 0.534357
Target:  5'- aGCgCGACGGCCagcaaacagagaCCGAuGcCGGCCGCGcGGa -3'
miRNA:   3'- -UG-GCUGCUGG------------GGCUuC-GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 36509 0.68 0.534357
Target:  5'- aGCgCG-CGGCCUCGAcgaGGCGGgCGCaGGAg -3'
miRNA:   3'- -UG-GCuGCUGGGGCU---UCGCCgGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 35818 0.68 0.534357
Target:  5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3'
miRNA:   3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5'
24421 5' -62.9 NC_005264.1 + 16882 0.68 0.53809
Target:  5'- cGCCGGCGAaggUcgcagcagagaaauuCCCGu--CGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGCU---G---------------GGGCuucGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 114739 0.68 0.543708
Target:  5'- aGCCGcgcGCGugcagaaCCCGc-GCGGCCGCGGu -3'
miRNA:   3'- -UGGC---UGCug-----GGGCuuCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 38811 0.68 0.543708
Target:  5'- -gCGGCGACCCCGgcGCGGaCGa-GAa -3'
miRNA:   3'- ugGCUGCUGGGGCuuCGCCgGCgcCU- -5'
24421 5' -62.9 NC_005264.1 + 20283 0.68 0.543708
Target:  5'- gACCGucugcgcgcuuGCGGCCCCGAGG-GGCUGaGGu -3'
miRNA:   3'- -UGGC-----------UGCUGGGGCUUCgCCGGCgCCu -5'
24421 5' -62.9 NC_005264.1 + 45776 0.68 0.543708
Target:  5'- -gCGAUGGgCgCCGGAGCGGCUauuGCGGu -3'
miRNA:   3'- ugGCUGCUgG-GGCUUCGCCGG---CGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.