miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 38811 0.68 0.543708
Target:  5'- -gCGGCGACCCCGgcGCGGaCGa-GAa -3'
miRNA:   3'- ugGCUGCUGGGGCuuCGCCgGCgcCU- -5'
24421 5' -62.9 NC_005264.1 + 45776 0.68 0.543708
Target:  5'- -gCGAUGGgCgCCGGAGCGGCUauuGCGGu -3'
miRNA:   3'- ugGCUGCUgG-GGCUUCGCCGG---CGCCu -5'
24421 5' -62.9 NC_005264.1 + 120536 0.68 0.553112
Target:  5'- uGCCGGCaGCCCUGcgaCGGCCcCGGAa -3'
miRNA:   3'- -UGGCUGcUGGGGCuucGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 109882 0.68 0.553112
Target:  5'- aGCgGAauACCCCGcGGCGcaaugcGCCGCGGGc -3'
miRNA:   3'- -UGgCUgcUGGGGCuUCGC------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 33998 0.68 0.553112
Target:  5'- -gCGGCGGCCCaUGuAGcCGGCCGCGu- -3'
miRNA:   3'- ugGCUGCUGGG-GCuUC-GCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 63628 0.68 0.553112
Target:  5'- uUCG-CGAga--GAAGCGGCCGCGGAg -3'
miRNA:   3'- uGGCuGCUggggCUUCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 4266 0.68 0.553112
Target:  5'- uGCCGcGCGggaACCgCGggGCGGCgGCaGAg -3'
miRNA:   3'- -UGGC-UGC---UGGgGCuuCGCCGgCGcCU- -5'
24421 5' -62.9 NC_005264.1 + 123293 0.68 0.553112
Target:  5'- uGCCGcGCGggaACCgCGggGCGGCgGCaGAg -3'
miRNA:   3'- -UGGC-UGC---UGGgGCuuCGCCGgCGcCU- -5'
24421 5' -62.9 NC_005264.1 + 153025 0.68 0.553112
Target:  5'- -gCGGCGGCCCaUGuAGcCGGCCGCGu- -3'
miRNA:   3'- ugGCUGCUGGG-GCuUC-GCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 152667 0.68 0.553112
Target:  5'- uGCCGACGACaagauacucgCCGAGGCcuGGaCGCGGu -3'
miRNA:   3'- -UGGCUGCUGg---------GGCUUCG--CCgGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 160358 0.67 0.562564
Target:  5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3'
miRNA:   3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 33872 0.67 0.562564
Target:  5'- -aCGugGAgcgucCgCUCGAGGCGGCgGUGGAa -3'
miRNA:   3'- ugGCugCU-----G-GGGCUUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 76030 0.67 0.562564
Target:  5'- gGCCGACGAC-----AGCGGCaGCGGAa -3'
miRNA:   3'- -UGGCUGCUGgggcuUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 41331 0.67 0.562564
Target:  5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3'
miRNA:   3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 99881 0.67 0.566357
Target:  5'- gGCgGGgaagucUGACCCCGAAcaaaaggcgcggcuuGCGGCCGCGc- -3'
miRNA:   3'- -UGgCU------GCUGGGGCUU---------------CGCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 140555 0.67 0.572059
Target:  5'- uACCGACGACCCUGcuGGCGaGaCaaCGGAa -3'
miRNA:   3'- -UGGCUGCUGGGGCu-UCGC-C-GgcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 104825 0.67 0.572059
Target:  5'- cGCaCGACGGCCuguCCGccGgGGCCGCuGAg -3'
miRNA:   3'- -UG-GCUGCUGG---GGCuuCgCCGGCGcCU- -5'
24421 5' -62.9 NC_005264.1 + 40786 0.67 0.572059
Target:  5'- uCCG-CGGCgCCGAgAGCGgagccgcuuGCCGCGGGg -3'
miRNA:   3'- uGGCuGCUGgGGCU-UCGC---------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 13603 0.67 0.580637
Target:  5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3'
miRNA:   3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5'
24421 5' -62.9 NC_005264.1 + 132630 0.67 0.580637
Target:  5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3'
miRNA:   3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.