Results 41 - 60 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 42361 | 0.66 | 0.619987 |
Target: 5'- cGCCGGCGAUggCCGguGCuGGCuccCGCGGAg -3' miRNA: 3'- -UGGCUGCUGg-GGCuuCG-CCG---GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 68043 | 0.66 | 0.619987 |
Target: 5'- aACCGcuucCGugCCCGAcgaGGCGGCgagauCGgGGAa -3' miRNA: 3'- -UGGCu---GCugGGGCU---UCGCCG-----GCgCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 36546 | 0.67 | 0.610361 |
Target: 5'- gGCCG-CG-CgCCCGaAAGCGGCauggccgccucCGCGGAc -3' miRNA: 3'- -UGGCuGCuG-GGGC-UUCGCCG-----------GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 101036 | 0.67 | 0.610361 |
Target: 5'- cCCGGCGAUgCCc--GCGGCCcgGUGGAg -3' miRNA: 3'- uGGCUGCUGgGGcuuCGCCGG--CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 134835 | 0.67 | 0.610361 |
Target: 5'- cCCGAcCGACCUgGAucgauG-GGCCGCGGc -3' miRNA: 3'- uGGCU-GCUGGGgCUu----CgCCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 28490 | 0.67 | 0.610361 |
Target: 5'- uCCGACGAUCCCGuAGC-GCUGCc-- -3' miRNA: 3'- uGGCUGCUGGGGCuUCGcCGGCGccu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 104116 | 0.67 | 0.610361 |
Target: 5'- -gCGACGuCCCCcuGGUGGCCGCc-- -3' miRNA: 3'- ugGCUGCuGGGGcuUCGCCGGCGccu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 54240 | 0.67 | 0.607475 |
Target: 5'- --aGGCGGCCCCGcgcgccaacgugucGAGUGGgaGCGGGg -3' miRNA: 3'- uggCUGCUGGGGC--------------UUCGCCggCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 132120 | 0.67 | 0.600749 |
Target: 5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3' miRNA: 3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 141467 | 0.67 | 0.600749 |
Target: 5'- -gCGGCGggGCCucuuuccaccggCCGAGGCGGCC-CGGGa -3' miRNA: 3'- ugGCUGC--UGG------------GGCUUCGCCGGcGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 13093 | 0.67 | 0.600749 |
Target: 5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3' miRNA: 3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 145481 | 0.67 | 0.600749 |
Target: 5'- gACCG-CG-CCgCCGccAGCuGCCGCGGAa -3' miRNA: 3'- -UGGCuGCuGG-GGCu-UCGcCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 66534 | 0.67 | 0.591157 |
Target: 5'- -aCGACGACCgCGuuGCGGgCGuCGGc -3' miRNA: 3'- ugGCUGCUGGgGCuuCGCCgGC-GCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 18055 | 0.67 | 0.591157 |
Target: 5'- -gCGGCGGCgCCGcGAGCcagGGCgCGCGGGc -3' miRNA: 3'- ugGCUGCUGgGGC-UUCG---CCG-GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 35263 | 0.67 | 0.591157 |
Target: 5'- gACCGAaaacacUGGCgCgGgcGCGGCCGUGGu -3' miRNA: 3'- -UGGCU------GCUGgGgCuuCGCCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 110517 | 0.67 | 0.587328 |
Target: 5'- cGCCcaGCGACCCUGAAGCuGCagaacuuuauaagGCGGAg -3' miRNA: 3'- -UGGc-UGCUGGGGCUUCGcCGg------------CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 22049 | 0.67 | 0.581592 |
Target: 5'- gACCGACG-CCuuGGacgguAGCGccGCCGcCGGAa -3' miRNA: 3'- -UGGCUGCuGGggCU-----UCGC--CGGC-GCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 123771 | 0.67 | 0.581592 |
Target: 5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3' miRNA: 3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 4745 | 0.67 | 0.581592 |
Target: 5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3' miRNA: 3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 161912 | 0.67 | 0.581592 |
Target: 5'- cCCGACGAgcccuCUCCGAccuuccccccAGCGGCCcGCGa- -3' miRNA: 3'- uGGCUGCU-----GGGGCU----------UCGCCGG-CGCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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