Results 61 - 80 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 13603 | 0.67 | 0.580637 |
Target: 5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3' miRNA: 3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 132630 | 0.67 | 0.580637 |
Target: 5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3' miRNA: 3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 40786 | 0.67 | 0.572059 |
Target: 5'- uCCG-CGGCgCCGAgAGCGgagccgcuuGCCGCGGGg -3' miRNA: 3'- uGGCuGCUGgGGCU-UCGC---------CGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 140555 | 0.67 | 0.572059 |
Target: 5'- uACCGACGACCCUGcuGGCGaGaCaaCGGAa -3' miRNA: 3'- -UGGCUGCUGGGGCu-UCGC-C-GgcGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 104825 | 0.67 | 0.572059 |
Target: 5'- cGCaCGACGGCCuguCCGccGgGGCCGCuGAg -3' miRNA: 3'- -UG-GCUGCUGG---GGCuuCgCCGGCGcCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 99881 | 0.67 | 0.566357 |
Target: 5'- gGCgGGgaagucUGACCCCGAAcaaaaggcgcggcuuGCGGCCGCGc- -3' miRNA: 3'- -UGgCU------GCUGGGGCUU---------------CGCCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 76030 | 0.67 | 0.562564 |
Target: 5'- gGCCGACGAC-----AGCGGCaGCGGAa -3' miRNA: 3'- -UGGCUGCUGgggcuUCGCCGgCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 41331 | 0.67 | 0.562564 |
Target: 5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3' miRNA: 3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 33872 | 0.67 | 0.562564 |
Target: 5'- -aCGugGAgcgucCgCUCGAGGCGGCgGUGGAa -3' miRNA: 3'- ugGCugCU-----G-GGGCUUCGCCGgCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 160358 | 0.67 | 0.562564 |
Target: 5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3' miRNA: 3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 123293 | 0.68 | 0.553112 |
Target: 5'- uGCCGcGCGggaACCgCGggGCGGCgGCaGAg -3' miRNA: 3'- -UGGC-UGC---UGGgGCuuCGCCGgCGcCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 153025 | 0.68 | 0.553112 |
Target: 5'- -gCGGCGGCCCaUGuAGcCGGCCGCGu- -3' miRNA: 3'- ugGCUGCUGGG-GCuUC-GCCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 33998 | 0.68 | 0.553112 |
Target: 5'- -gCGGCGGCCCaUGuAGcCGGCCGCGu- -3' miRNA: 3'- ugGCUGCUGGG-GCuUC-GCCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 4266 | 0.68 | 0.553112 |
Target: 5'- uGCCGcGCGggaACCgCGggGCGGCgGCaGAg -3' miRNA: 3'- -UGGC-UGC---UGGgGCuuCGCCGgCGcCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 109882 | 0.68 | 0.553112 |
Target: 5'- aGCgGAauACCCCGcGGCGcaaugcGCCGCGGGc -3' miRNA: 3'- -UGgCUgcUGGGGCuUCGC------CGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 120536 | 0.68 | 0.553112 |
Target: 5'- uGCCGGCaGCCCUGcgaCGGCCcCGGAa -3' miRNA: 3'- -UGGCUGcUGGGGCuucGCCGGcGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 152667 | 0.68 | 0.553112 |
Target: 5'- uGCCGACGACaagauacucgCCGAGGCcuGGaCGCGGu -3' miRNA: 3'- -UGGCUGCUGg---------GGCUUCG--CCgGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 63628 | 0.68 | 0.553112 |
Target: 5'- uUCG-CGAga--GAAGCGGCCGCGGAg -3' miRNA: 3'- uGGCuGCUggggCUUCGCCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 20283 | 0.68 | 0.543708 |
Target: 5'- gACCGucugcgcgcuuGCGGCCCCGAGG-GGCUGaGGu -3' miRNA: 3'- -UGGC-----------UGCUGGGGCUUCgCCGGCgCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 114739 | 0.68 | 0.543708 |
Target: 5'- aGCCGcgcGCGugcagaaCCCGc-GCGGCCGCGGu -3' miRNA: 3'- -UGGC---UGCug-----GGGCuuCGCCGGCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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