Results 101 - 120 of 160 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 46417 | 0.68 | 0.49757 |
Target: 5'- gGCCaGACGcCCCC--AGCGaccuGCCGCGGGc -3' miRNA: 3'- -UGG-CUGCuGGGGcuUCGC----CGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 106522 | 0.68 | 0.49757 |
Target: 5'- uGCgCGACGGCggcagcGCGGCCGCGGAg -3' miRNA: 3'- -UG-GCUGCUGgggcuuCGCCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 146346 | 0.68 | 0.496664 |
Target: 5'- cGCCGGCgugccucGACCCCGcAGGCcaCCGCGGc -3' miRNA: 3'- -UGGCUG-------CUGGGGC-UUCGccGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 49155 | 0.69 | 0.488548 |
Target: 5'- --aGACauGCCCCacAGCGGCCGCGGc -3' miRNA: 3'- uggCUGc-UGGGGcuUCGCCGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 101422 | 0.69 | 0.488548 |
Target: 5'- cGCCGAaagcauacgaGACCCgGAAGCGGCgaaGGAg -3' miRNA: 3'- -UGGCUg---------CUGGGgCUUCGCCGgcgCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 156596 | 0.69 | 0.488548 |
Target: 5'- gACUGAgGAUCCgCGggGCcGCCGCaGAa -3' miRNA: 3'- -UGGCUgCUGGG-GCuuCGcCGGCGcCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 83116 | 0.69 | 0.488548 |
Target: 5'- cGCCGACGGgCgCCaa---GGCCGCGGAg -3' miRNA: 3'- -UGGCUGCUgG-GGcuucgCCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 75389 | 0.69 | 0.488548 |
Target: 5'- gUCGugGugcgcGCCaCCGucugcGCGGCCGCGGGc -3' miRNA: 3'- uGGCugC-----UGG-GGCuu---CGCCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 121433 | 0.69 | 0.479605 |
Target: 5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3' miRNA: 3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 70037 | 0.69 | 0.479605 |
Target: 5'- cACUGGCGGCCUCGuccucuuuaGGGgGGUCGgGGAc -3' miRNA: 3'- -UGGCUGCUGGGGC---------UUCgCCGGCgCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 2406 | 0.69 | 0.479605 |
Target: 5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3' miRNA: 3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 142933 | 0.69 | 0.479605 |
Target: 5'- gGCaCGGCGccaccacaaaGCaCCCGAAauggcuagcGCGGCCGCGGc -3' miRNA: 3'- -UG-GCUGC----------UG-GGGCUU---------CGCCGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 19422 | 0.69 | 0.470742 |
Target: 5'- -gCGA-GGCgCCGGGuGUGGCCGCGGGg -3' miRNA: 3'- ugGCUgCUGgGGCUU-CGCCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 129035 | 0.69 | 0.45327 |
Target: 5'- uGCCGGCGAgCCgGuccaAAGCGGCgugCGCGGc -3' miRNA: 3'- -UGGCUGCUgGGgC----UUCGCCG---GCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 38555 | 0.7 | 0.439551 |
Target: 5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3' miRNA: 3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 157582 | 0.7 | 0.439551 |
Target: 5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3' miRNA: 3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 146954 | 0.7 | 0.436158 |
Target: 5'- gGCUgGAUGGCgCUGAGGCcgcaGGCUGCGGAg -3' miRNA: 3'- -UGG-CUGCUGgGGCUUCG----CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 90636 | 0.7 | 0.427742 |
Target: 5'- -aCGcACaACCCCGAAG-GGCgCGCGGAg -3' miRNA: 3'- ugGC-UGcUGGGGCUUCgCCG-GCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 6002 | 0.7 | 0.426906 |
Target: 5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3' miRNA: 3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 125029 | 0.7 | 0.426906 |
Target: 5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3' miRNA: 3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home