miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 38320 0.66 0.64889
Target:  5'- gGCCGACGaggguuggcggGCCCUGGccgugaugcugGGCGGCgggGCGGu -3'
miRNA:   3'- -UGGCUGC-----------UGGGGCU-----------UCGCCGg--CGCCu -5'
24421 5' -62.9 NC_005264.1 + 38555 0.7 0.439551
Target:  5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 38811 0.68 0.543708
Target:  5'- -gCGGCGACCCCGgcGCGGaCGa-GAa -3'
miRNA:   3'- ugGCUGCUGGGGCuuCGCCgGCgcCU- -5'
24421 5' -62.9 NC_005264.1 + 39955 0.66 0.65851
Target:  5'- -aCGGCGACCUCGGcuGCGaGuCUGCGGu -3'
miRNA:   3'- ugGCUGCUGGGGCUu-CGC-C-GGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 40786 0.67 0.572059
Target:  5'- uCCG-CGGCgCCGAgAGCGgagccgcuuGCCGCGGGg -3'
miRNA:   3'- uGGCuGCUGgGGCU-UCGC---------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 41331 0.67 0.562564
Target:  5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3'
miRNA:   3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 41614 0.66 0.629622
Target:  5'- cGCUGACGAgCUCguaGAAGCGGCUggccagauGCGGc -3'
miRNA:   3'- -UGGCUGCUgGGG---CUUCGCCGG--------CGCCu -5'
24421 5' -62.9 NC_005264.1 + 42361 0.66 0.619987
Target:  5'- cGCCGGCGAUggCCGguGCuGGCuccCGCGGAg -3'
miRNA:   3'- -UGGCUGCUGg-GGCuuCG-CCG---GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 42586 0.72 0.307232
Target:  5'- cACCGuGCGggauguugugcaACCCCGcAGCcauGGCCGCGGAc -3'
miRNA:   3'- -UGGC-UGC------------UGGGGCuUCG---CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 42766 0.7 0.402279
Target:  5'- uGCCGAgCGACCCgGGuGGCcaguuacGGCCgGCGGAa -3'
miRNA:   3'- -UGGCU-GCUGGGgCU-UCG-------CCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 45737 0.66 0.666192
Target:  5'- cAUCGACGGCUCCGAaaacugccauaGGaccccugcgcggGGCgCGCGGAg -3'
miRNA:   3'- -UGGCUGCUGGGGCU-----------UCg-----------CCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 45776 0.68 0.543708
Target:  5'- -gCGAUGGgCgCCGGAGCGGCUauuGCGGu -3'
miRNA:   3'- ugGCUGCUgG-GGCUUCGCCGG---CGCCu -5'
24421 5' -62.9 NC_005264.1 + 46417 0.68 0.49757
Target:  5'- gGCCaGACGcCCCC--AGCGaccuGCCGCGGGc -3'
miRNA:   3'- -UGG-CUGCuGGGGcuUCGC----CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 48730 0.68 0.525063
Target:  5'- gGCCGGCGAUgCUGAugaAGCGGCuCGUaacucagagaGGAg -3'
miRNA:   3'- -UGGCUGCUGgGGCU---UCGCCG-GCG----------CCU- -5'
24421 5' -62.9 NC_005264.1 + 48879 0.71 0.364051
Target:  5'- cGCCGgugccuucACGuCCgaGAAGCGGCaCGCGGAa -3'
miRNA:   3'- -UGGC--------UGCuGGggCUUCGCCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 49155 0.69 0.488548
Target:  5'- --aGACauGCCCCacAGCGGCCGCGGc -3'
miRNA:   3'- uggCUGc-UGGGGcuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 49596 0.66 0.668111
Target:  5'- cGCCGGCGACCaggacgaCGggGgGcGCUcgGUGGGg -3'
miRNA:   3'- -UGGCUGCUGGg------GCuuCgC-CGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 49804 0.82 0.071571
Target:  5'- cGCCG-CGGCCCaGucGCGGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCUGGGgCuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 51677 0.66 0.65851
Target:  5'- aGCCGGCaGCUCaGGAGgGGUCGUGGu -3'
miRNA:   3'- -UGGCUGcUGGGgCUUCgCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 54240 0.67 0.607475
Target:  5'- --aGGCGGCCCCGcgcgccaacgugucGAGUGGgaGCGGGg -3'
miRNA:   3'- uggCUGCUGGGGC--------------UUCGCCggCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.