miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 91019 0.72 0.307232
Target:  5'- uUCG-CGACCCCGcGGGCGGCUucggccgcuauGCGGAg -3'
miRNA:   3'- uGGCuGCUGGGGC-UUCGCCGG-----------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 92180 0.66 0.619987
Target:  5'- uGCCGGCGGCgCC---GCGGCCaCGGu -3'
miRNA:   3'- -UGGCUGCUGgGGcuuCGCCGGcGCCu -5'
24421 5' -62.9 NC_005264.1 + 93775 0.72 0.300626
Target:  5'- uGCgCGACGACgaugaCCUGcccGGCGGCCGCGGc -3'
miRNA:   3'- -UG-GCUGCUG-----GGGCu--UCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 94377 0.66 0.668111
Target:  5'- cACCGACGAaguggugucgucCCUCGucuauGaucaGGCCGCGGc -3'
miRNA:   3'- -UGGCUGCU------------GGGGCuu---Cg---CCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 95366 0.66 0.657548
Target:  5'- -gCGGCGGCCCgGccucggguuucacGAGCuGGCCGCGc- -3'
miRNA:   3'- ugGCUGCUGGGgC-------------UUCG-CCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 99622 0.71 0.362545
Target:  5'- gGCCGuuaugcggaaaGACCCgGAgacGGCGGCCGUGGc -3'
miRNA:   3'- -UGGCug---------CUGGGgCU---UCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 99803 0.66 0.639258
Target:  5'- gGCCGAggcgauggucgcCGACCCCGggGUaaGGCU--GGAg -3'
miRNA:   3'- -UGGCU------------GCUGGGGCuuCG--CCGGcgCCU- -5'
24421 5' -62.9 NC_005264.1 + 99881 0.67 0.566357
Target:  5'- gGCgGGgaagucUGACCCCGAAcaaaaggcgcggcuuGCGGCCGCGc- -3'
miRNA:   3'- -UGgCU------GCUGGGGCUU---------------CGCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 100089 0.66 0.638295
Target:  5'- aGCaUGGCGGCCgCGggGCucagcgacgacgcGGuuGCGGGa -3'
miRNA:   3'- -UG-GCUGCUGGgGCuuCG-------------CCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 100487 0.72 0.327713
Target:  5'- gGCC-AgGGCCCUGGAGgGGuuGCGGGc -3'
miRNA:   3'- -UGGcUgCUGGGGCUUCgCCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 100610 1.07 0.001123
Target:  5'- uACCGACGACCCCGAAGCGGCCGCGGAg -3'
miRNA:   3'- -UGGCUGCUGGGGCUUCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 101036 0.67 0.610361
Target:  5'- cCCGGCGAUgCCc--GCGGCCcgGUGGAg -3'
miRNA:   3'- uGGCUGCUGgGGcuuCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 101422 0.69 0.488548
Target:  5'- cGCCGAaagcauacgaGACCCgGAAGCGGCgaaGGAg -3'
miRNA:   3'- -UGGCUg---------CUGGGgCUUCGCCGgcgCCU- -5'
24421 5' -62.9 NC_005264.1 + 101474 0.73 0.263291
Target:  5'- gACCG-CGACCCCGAcgcuuuGaCGGCCauGCGGGa -3'
miRNA:   3'- -UGGCuGCUGGGGCUu-----C-GCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 102854 0.68 0.543708
Target:  5'- gGCCGucucgcucGCGGCCaCCGccgcguggcuGAGCGGC-GCGGAc -3'
miRNA:   3'- -UGGC--------UGCUGG-GGC----------UUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 103044 0.68 0.515831
Target:  5'- -aCGuACGGCUCCGcGGCggacacGGCCGUGGAc -3'
miRNA:   3'- ugGC-UGCUGGGGCuUCG------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 103070 0.66 0.619987
Target:  5'- -gCGACGAguCCCgCGAAGCGuCCGCGu- -3'
miRNA:   3'- ugGCUGCU--GGG-GCUUCGCcGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 103125 0.72 0.341919
Target:  5'- uCCGGCGcgguaGCCgCCGgcGCGGCgCGCGGc -3'
miRNA:   3'- uGGCUGC-----UGG-GGCuuCGCCG-GCGCCu -5'
24421 5' -62.9 NC_005264.1 + 104081 0.73 0.269242
Target:  5'- cACCGcGCGugcGCCuCUGAuagcgcagcGGCGGCCGCGGAu -3'
miRNA:   3'- -UGGC-UGC---UGG-GGCU---------UCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 104116 0.67 0.610361
Target:  5'- -gCGACGuCCCCcuGGUGGCCGCc-- -3'
miRNA:   3'- ugGCUGCuGGGGcuUCGCCGGCGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.