miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 146954 0.7 0.436158
Target:  5'- gGCUgGAUGGCgCUGAGGCcgcaGGCUGCGGAg -3'
miRNA:   3'- -UGG-CUGCUGgGGCUUCG----CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 146346 0.68 0.496664
Target:  5'- cGCCGGCgugccucGACCCCGcAGGCcaCCGCGGc -3'
miRNA:   3'- -UGGCUG-------CUGGGGC-UUCGccGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 145975 0.68 0.506665
Target:  5'- cGCCGGCGcgaauacgaACUgCGcGGCGGCUgGCGGAa -3'
miRNA:   3'- -UGGCUGC---------UGGgGCuUCGCCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 145481 0.67 0.600749
Target:  5'- gACCG-CG-CCgCCGccAGCuGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCuGG-GGCu-UCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 143654 0.68 0.49757
Target:  5'- gGCCGACGgucgGCCCCGGAGCcaucauccuGGuuGUGa- -3'
miRNA:   3'- -UGGCUGC----UGGGGCUUCG---------CCggCGCcu -5'
24421 5' -62.9 NC_005264.1 + 142933 0.69 0.479605
Target:  5'- gGCaCGGCGccaccacaaaGCaCCCGAAauggcuagcGCGGCCGCGGc -3'
miRNA:   3'- -UG-GCUGC----------UG-GGGCUU---------CGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 141467 0.67 0.600749
Target:  5'- -gCGGCGggGCCucuuuccaccggCCGAGGCGGCC-CGGGa -3'
miRNA:   3'- ugGCUGC--UGG------------GGCUUCGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 140555 0.67 0.572059
Target:  5'- uACCGACGACCCUGcuGGCGaGaCaaCGGAa -3'
miRNA:   3'- -UGGCUGCUGGGGCu-UCGC-C-GgcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 136662 0.66 0.668111
Target:  5'- cGCCaACGGCCCCGccGacaGuGCCGCGa- -3'
miRNA:   3'- -UGGcUGCUGGGGCuuCg--C-CGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 136560 0.68 0.49757
Target:  5'- aGCCGaucGCGAUCCaGGAaCGcGCCGCGGAa -3'
miRNA:   3'- -UGGC---UGCUGGGgCUUcGC-CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 134835 0.67 0.610361
Target:  5'- cCCGAcCGACCUgGAucgauG-GGCCGCGGc -3'
miRNA:   3'- uGGCU-GCUGGGgCUu----CgCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 132630 0.67 0.580637
Target:  5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3'
miRNA:   3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5'
24421 5' -62.9 NC_005264.1 + 132476 0.73 0.263291
Target:  5'- gACgCGGCGGCgCCGAAGgGGCUccuGCGGGg -3'
miRNA:   3'- -UG-GCUGCUGgGGCUUCgCCGG---CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 132326 0.72 0.320775
Target:  5'- gUCGugGAgcuCCCCGGAGgaCGGCCGCGcGGa -3'
miRNA:   3'- uGGCugCU---GGGGCUUC--GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 132120 0.67 0.600749
Target:  5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3'
miRNA:   3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 129035 0.69 0.45327
Target:  5'- uGCCGGCGAgCCgGuccaAAGCGGCgugCGCGGc -3'
miRNA:   3'- -UGGCUGCUgGGgC----UUCGCCG---GCGCCu -5'
24421 5' -62.9 NC_005264.1 + 129031 0.66 0.64889
Target:  5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3'
miRNA:   3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5'
24421 5' -62.9 NC_005264.1 + 127826 0.68 0.534357
Target:  5'- cCCGACagcguuGCCuCCGcGGCGGCCgGCGGu -3'
miRNA:   3'- uGGCUGc-----UGG-GGCuUCGCCGG-CGCCu -5'
24421 5' -62.9 NC_005264.1 + 126159 0.66 0.64889
Target:  5'- gGCCGACuGAgCCgaCGAAacGUGGUCGCGGc -3'
miRNA:   3'- -UGGCUG-CUgGG--GCUU--CGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 126095 0.68 0.515831
Target:  5'- cGCCGGcCGGCgCCGucGC-GCUGCGGGg -3'
miRNA:   3'- -UGGCU-GCUGgGGCuuCGcCGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.