miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 125029 0.7 0.426906
Target:  5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3'
miRNA:   3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 124630 0.66 0.668111
Target:  5'- gAUCGGCGA--CCGGAGCcgcuaucgGGCCGCGcGAc -3'
miRNA:   3'- -UGGCUGCUggGGCUUCG--------CCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 124364 0.66 0.668111
Target:  5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3'
miRNA:   3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 123771 0.67 0.581592
Target:  5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3'
miRNA:   3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 123293 0.68 0.553112
Target:  5'- uGCCGcGCGggaACCgCGggGCGGCgGCaGAg -3'
miRNA:   3'- -UGGC-UGC---UGGgGCuuCGCCGgCGcCU- -5'
24421 5' -62.9 NC_005264.1 + 122035 0.78 0.138825
Target:  5'- cUCGGCGACCCCGcggcAAGCGGCuccgcucucggcgcCGCGGAa -3'
miRNA:   3'- uGGCUGCUGGGGC----UUCGCCG--------------GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 121433 0.69 0.479605
Target:  5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 120740 0.71 0.385585
Target:  5'- uGCCGGCGACUgCGAcgacagggauaucccGGCGcagcugacgccacgcGCCGCGGGc -3'
miRNA:   3'- -UGGCUGCUGGgGCU---------------UCGC---------------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 120536 0.68 0.553112
Target:  5'- uGCCGGCaGCCCUGcgaCGGCCcCGGAa -3'
miRNA:   3'- -UGGCUGcUGGGGCuucGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 119917 0.68 0.525063
Target:  5'- gACUGgguguACGGCCCCGugucGCgGGCCGCuGGGg -3'
miRNA:   3'- -UGGC-----UGCUGGGGCuu--CG-CCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 118047 0.66 0.65851
Target:  5'- uGCCGcgGCGACCgCGGcgucGGCaacgaucGCCGCGGGc -3'
miRNA:   3'- -UGGC--UGCUGGgGCU----UCGc------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 114739 0.68 0.543708
Target:  5'- aGCCGcgcGCGugcagaaCCCGc-GCGGCCGCGGu -3'
miRNA:   3'- -UGGC---UGCug-----GGGCuuCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 113261 0.66 0.629622
Target:  5'- cGCCGGCGGCgUgcgccgagaaggUGAAGCGGUCGCu-- -3'
miRNA:   3'- -UGGCUGCUGgG------------GCUUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 111756 0.78 0.136483
Target:  5'- cACCGGCGACCgCGAAGCaGGCUagGCGGc -3'
miRNA:   3'- -UGGCUGCUGGgGCUUCG-CCGG--CGCCu -5'
24421 5' -62.9 NC_005264.1 + 110517 0.67 0.587328
Target:  5'- cGCCcaGCGACCCUGAAGCuGCagaacuuuauaagGCGGAg -3'
miRNA:   3'- -UGGc-UGCUGGGGCUUCGcCGg------------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 109882 0.68 0.553112
Target:  5'- aGCgGAauACCCCGcGGCGcaaugcGCCGCGGGc -3'
miRNA:   3'- -UGgCUgcUGGGGCuUCGC------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 106920 0.66 0.628658
Target:  5'- aGCCGGgucacuuuuuccuCGACagCUGcGGCGGCCGCaGGAu -3'
miRNA:   3'- -UGGCU-------------GCUGg-GGCuUCGCCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 106522 0.68 0.49757
Target:  5'- uGCgCGACGGCggcagcGCGGCCGCGGAg -3'
miRNA:   3'- -UG-GCUGCUGgggcuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 105227 0.68 0.525063
Target:  5'- -gUGuACGACUgCG-AGCaGGCCGCGGAg -3'
miRNA:   3'- ugGC-UGCUGGgGCuUCG-CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 104825 0.67 0.572059
Target:  5'- cGCaCGACGGCCuguCCGccGgGGCCGCuGAg -3'
miRNA:   3'- -UG-GCUGCUGG---GGCuuCgCCGGCGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.