miRNA display CGI


Results 81 - 100 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 90636 0.7 0.427742
Target:  5'- -aCGcACaACCCCGAAG-GGCgCGCGGAg -3'
miRNA:   3'- ugGC-UGcUGGGGCUUCgCCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 89947 0.66 0.668111
Target:  5'- gGCCGAau-CCCUGAAGCaGGCaagccguGUGGAa -3'
miRNA:   3'- -UGGCUgcuGGGGCUUCG-CCGg------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 86157 0.66 0.629622
Target:  5'- gUgGGCGACagCCu-GGUGGCCGUGGAa -3'
miRNA:   3'- uGgCUGCUGg-GGcuUCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 83116 0.69 0.488548
Target:  5'- cGCCGACGGgCgCCaa---GGCCGCGGAg -3'
miRNA:   3'- -UGGCUGCUgG-GGcuucgCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 79966 0.68 0.534357
Target:  5'- aGCgCGACGGCCagcaaacagagaCCGAuGcCGGCCGCGcGGa -3'
miRNA:   3'- -UG-GCUGCUGG------------GGCUuC-GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 77048 0.7 0.395068
Target:  5'- -gCGACGACCCgGAAGaGGCgCGCGa- -3'
miRNA:   3'- ugGCUGCUGGGgCUUCgCCG-GCGCcu -5'
24421 5' -62.9 NC_005264.1 + 76030 0.67 0.562564
Target:  5'- gGCCGACGAC-----AGCGGCaGCGGAa -3'
miRNA:   3'- -UGGCUGCUGgggcuUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 75389 0.69 0.488548
Target:  5'- gUCGugGugcgcGCCaCCGucugcGCGGCCGCGGGc -3'
miRNA:   3'- uGGCugC-----UGG-GGCuu---CGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 75301 0.75 0.224594
Target:  5'- uGCgGACGACUCCucGGaGGCCGCGGGc -3'
miRNA:   3'- -UGgCUGCUGGGGcuUCgCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 70037 0.69 0.479605
Target:  5'- cACUGGCGGCCUCGuccucuuuaGGGgGGUCGgGGAc -3'
miRNA:   3'- -UGGCUGCUGGGGC---------UUCgCCGGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 68043 0.66 0.619987
Target:  5'- aACCGcuucCGugCCCGAcgaGGCGGCgagauCGgGGAa -3'
miRNA:   3'- -UGGCu---GCugGGGCU---UCGCCG-----GCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 66534 0.67 0.591157
Target:  5'- -aCGACGACCgCGuuGCGGgCGuCGGc -3'
miRNA:   3'- ugGCUGCUGGgGCuuCGCCgGC-GCCu -5'
24421 5' -62.9 NC_005264.1 + 65161 0.66 0.668111
Target:  5'- cACCGcgGCGGCgCCCucucuGGCcauGGCCGCGGc -3'
miRNA:   3'- -UGGC--UGCUG-GGGcu---UCG---CCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 64750 0.77 0.146781
Target:  5'- cCCGGuaACCCCGggGCGGCCGgGGc -3'
miRNA:   3'- uGGCUgcUGGGGCuuCGCCGGCgCCu -5'
24421 5' -62.9 NC_005264.1 + 64415 0.66 0.629622
Target:  5'- gGCCGACG-CCgCGGgcacGGCGaugacgucuGCCGCGGc -3'
miRNA:   3'- -UGGCUGCuGGgGCU----UCGC---------CGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 63628 0.68 0.553112
Target:  5'- uUCG-CGAga--GAAGCGGCCGCGGAg -3'
miRNA:   3'- uGGCuGCUggggCUUCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 61775 0.72 0.320088
Target:  5'- uUUGGCGACCCUGAucgacucgagcAGCuccaccgGGCCGCGGGc -3'
miRNA:   3'- uGGCUGCUGGGGCU-----------UCG-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 61489 0.66 0.629622
Target:  5'- cGCCGACGcGCCCCGcggucucggcuAGCG-CCGCGc- -3'
miRNA:   3'- -UGGCUGC-UGGGGCu----------UCGCcGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 57991 0.72 0.307232
Target:  5'- cGCgCGGCGGCCgUGGcucAGCGGCCccgGCGGAc -3'
miRNA:   3'- -UG-GCUGCUGGgGCU---UCGCCGG---CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 56823 0.7 0.395068
Target:  5'- uGCgCGGCGGCCCUagcuAGCGGCuCGUGGc -3'
miRNA:   3'- -UG-GCUGCUGGGGcu--UCGCCG-GCGCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.