miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 49155 0.69 0.488548
Target:  5'- --aGACauGCCCCacAGCGGCCGCGGc -3'
miRNA:   3'- uggCUGc-UGGGGcuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 121433 0.69 0.479605
Target:  5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 61775 0.72 0.320088
Target:  5'- uUUGGCGACCCUGAucgacucgagcAGCuccaccgGGCCGCGGGc -3'
miRNA:   3'- uGGCUGCUGGGGCU-----------UCG-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 161613 0.72 0.307232
Target:  5'- cACCGuGCGggauguugugcaACCCCGcAGCcauGGCCGCGGAc -3'
miRNA:   3'- -UGGC-UGC------------UGGGGCuUCG---CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 57991 0.72 0.307232
Target:  5'- cGCgCGGCGGCCgUGGcucAGCGGCCccgGCGGAc -3'
miRNA:   3'- -UG-GCUGCUGGgGCU---UCGCCGG---CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 93775 0.72 0.300626
Target:  5'- uGCgCGACGACgaugaCCUGcccGGCGGCCGCGGc -3'
miRNA:   3'- -UG-GCUGCUG-----GGGCu--UCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 132476 0.73 0.263291
Target:  5'- gACgCGGCGGCgCCGAAGgGGCUccuGCGGGg -3'
miRNA:   3'- -UG-GCUGCUGgGGCUUCgCCGG---CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 149980 0.74 0.251711
Target:  5'- cAUCGGCGACCCCGAAcCGucuGgCGCGGAa -3'
miRNA:   3'- -UGGCUGCUGGGGCUUcGC---CgGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 75301 0.75 0.224594
Target:  5'- uGCgGACGACUCCucGGaGGCCGCGGGc -3'
miRNA:   3'- -UGgCUGCUGGGGcuUCgCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 154768 0.75 0.214461
Target:  5'- cGCCGccCGugCCCGAcuGCGGCCGCGa- -3'
miRNA:   3'- -UGGCu-GCugGGGCUu-CGCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 132326 0.72 0.320775
Target:  5'- gUCGugGAgcuCCCCGGAGgaCGGCCGCGcGGa -3'
miRNA:   3'- uGGCugCU---GGGGCUUC--GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 36410 0.71 0.348456
Target:  5'- aGCUGACGugaggcGCCCC-AAGUaccugcaGGCCGCGGAg -3'
miRNA:   3'- -UGGCUGC------UGGGGcUUCG-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 19422 0.69 0.470742
Target:  5'- -gCGA-GGCgCCGGGuGUGGCCGCGGGg -3'
miRNA:   3'- ugGCUgCUGgGGCUU-CGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 157582 0.7 0.439551
Target:  5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3'
miRNA:   3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 125029 0.7 0.426906
Target:  5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3'
miRNA:   3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 16566 0.7 0.403085
Target:  5'- gUgGGCGGCgCCGggGCGGCgGCGc- -3'
miRNA:   3'- uGgCUGCUGgGGCuuCGCCGgCGCcu -5'
24421 5' -62.9 NC_005264.1 + 156596 0.7 0.402279
Target:  5'- gACCG-CGACggaggcggcaaguCUCGcGGCGGCCGCGGc -3'
miRNA:   3'- -UGGCuGCUG-------------GGGCuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 161792 0.7 0.402279
Target:  5'- uGCCGAgCGACCCgGGuGGCcaguuacGGCCgGCGGAa -3'
miRNA:   3'- -UGGCU-GCUGGGgCU-UCG-------CCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 77048 0.7 0.395068
Target:  5'- -gCGACGACCCgGAAGaGGCgCGCGa- -3'
miRNA:   3'- ugGCUGCUGGGgCUUCgCCG-GCGCcu -5'
24421 5' -62.9 NC_005264.1 + 99622 0.71 0.362545
Target:  5'- gGCCGuuaugcggaaaGACCCgGAgacGGCGGCCGUGGc -3'
miRNA:   3'- -UGGCug---------CUGGGgCU---UCGCCGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.