Results 41 - 60 of 160 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 93775 | 0.72 | 0.300626 |
Target: 5'- uGCgCGACGACgaugaCCUGcccGGCGGCCGCGGc -3' miRNA: 3'- -UG-GCUGCUG-----GGGCu--UCGCCGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 132476 | 0.73 | 0.263291 |
Target: 5'- gACgCGGCGGCgCCGAAGgGGCUccuGCGGGg -3' miRNA: 3'- -UG-GCUGCUGgGGCUUCgCCGG---CGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 149980 | 0.74 | 0.251711 |
Target: 5'- cAUCGGCGACCCCGAAcCGucuGgCGCGGAa -3' miRNA: 3'- -UGGCUGCUGGGGCUUcGC---CgGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 75301 | 0.75 | 0.224594 |
Target: 5'- uGCgGACGACUCCucGGaGGCCGCGGGc -3' miRNA: 3'- -UGgCUGCUGGGGcuUCgCCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 154768 | 0.75 | 0.214461 |
Target: 5'- cGCCGccCGugCCCGAcuGCGGCCGCGa- -3' miRNA: 3'- -UGGCu-GCugGGGCUu-CGCCGGCGCcu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 156596 | 0.7 | 0.402279 |
Target: 5'- gACCG-CGACggaggcggcaaguCUCGcGGCGGCCGCGGc -3' miRNA: 3'- -UGGCuGCUG-------------GGGCuUCGCCGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 16566 | 0.7 | 0.403085 |
Target: 5'- gUgGGCGGCgCCGggGCGGCgGCGc- -3' miRNA: 3'- uGgCUGCUGgGGCuuCGCCGgCGCcu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 36509 | 0.68 | 0.534357 |
Target: 5'- aGCgCG-CGGCCUCGAcgaGGCGGgCGCaGGAg -3' miRNA: 3'- -UG-GCuGCUGGGGCU---UCGCCgGCG-CCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 154844 | 0.68 | 0.534357 |
Target: 5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3' miRNA: 3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 105227 | 0.68 | 0.525063 |
Target: 5'- -gUGuACGACUgCG-AGCaGGCCGCGGAg -3' miRNA: 3'- ugGC-UGCUGGgGCuUCG-CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 119917 | 0.68 | 0.525063 |
Target: 5'- gACUGgguguACGGCCCCGugucGCgGGCCGCuGGGg -3' miRNA: 3'- -UGGC-----UGCUGGGGCuu--CG-CCGGCG-CCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 126095 | 0.68 | 0.515831 |
Target: 5'- cGCCGGcCGGCgCCGucGC-GCUGCGGGg -3' miRNA: 3'- -UGGCU-GCUGgGGCuuCGcCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 136560 | 0.68 | 0.49757 |
Target: 5'- aGCCGaucGCGAUCCaGGAaCGcGCCGCGGAa -3' miRNA: 3'- -UGGC---UGCUGGGgCUUcGC-CGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 143654 | 0.68 | 0.49757 |
Target: 5'- gGCCGACGgucgGCCCCGGAGCcaucauccuGGuuGUGa- -3' miRNA: 3'- -UGGCUGC----UGGGGCUUCG---------CCggCGCcu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 146346 | 0.68 | 0.496664 |
Target: 5'- cGCCGGCgugccucGACCCCGcAGGCcaCCGCGGc -3' miRNA: 3'- -UGGCUG-------CUGGGGC-UUCGccGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 49155 | 0.69 | 0.488548 |
Target: 5'- --aGACauGCCCCacAGCGGCCGCGGc -3' miRNA: 3'- uggCUGc-UGGGGcuUCGCCGGCGCCu -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 121433 | 0.69 | 0.479605 |
Target: 5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3' miRNA: 3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 19422 | 0.69 | 0.470742 |
Target: 5'- -gCGA-GGCgCCGGGuGUGGCCGCGGGg -3' miRNA: 3'- ugGCUgCUGgGGCUU-CGCCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 157582 | 0.7 | 0.439551 |
Target: 5'- gGCCG-CGACucgccuCCCGgcGCucuaaacguacccgaGGCCGCGGAa -3' miRNA: 3'- -UGGCuGCUG------GGGCuuCG---------------CCGGCGCCU- -5' |
|||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 125029 | 0.7 | 0.426906 |
Target: 5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3' miRNA: 3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home