Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 54240 | 0.67 | 0.607475 |
Target: 5'- --aGGCGGCCCCGcgcgccaacgugucGAGUGGgaGCGGGg -3' miRNA: 3'- uggCUGCUGGGGC--------------UUCGCCggCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 141467 | 0.67 | 0.600749 |
Target: 5'- -gCGGCGggGCCucuuuccaccggCCGAGGCGGCC-CGGGa -3' miRNA: 3'- ugGCUGC--UGG------------GGCUUCGCCGGcGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 13093 | 0.67 | 0.600749 |
Target: 5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3' miRNA: 3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 145481 | 0.67 | 0.600749 |
Target: 5'- gACCG-CG-CCgCCGccAGCuGCCGCGGAa -3' miRNA: 3'- -UGGCuGCuGG-GGCu-UCGcCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 110517 | 0.67 | 0.587328 |
Target: 5'- cGCCcaGCGACCCUGAAGCuGCagaacuuuauaagGCGGAg -3' miRNA: 3'- -UGGc-UGCUGGGGCUUCGcCGg------------CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 4745 | 0.67 | 0.581592 |
Target: 5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3' miRNA: 3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 113261 | 0.66 | 0.629622 |
Target: 5'- cGCCGGCGGCgUgcgccgagaaggUGAAGCGGUCGCu-- -3' miRNA: 3'- -UGGCUGCUGgG------------GCUUCGCCGGCGccu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 100089 | 0.66 | 0.638295 |
Target: 5'- aGCaUGGCGGCCgCGggGCucagcgacgacgcGGuuGCGGGa -3' miRNA: 3'- -UG-GCUGCUGGgGCuuCG-------------CCggCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 94377 | 0.66 | 0.668111 |
Target: 5'- cACCGACGAaguggugucgucCCUCGucuauGaucaGGCCGCGGc -3' miRNA: 3'- -UGGCUGCU------------GGGGCuu---Cg---CCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 89947 | 0.66 | 0.668111 |
Target: 5'- gGCCGAau-CCCUGAAGCaGGCaagccguGUGGAa -3' miRNA: 3'- -UGGCUgcuGGGGCUUCG-CCGg------CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 5337 | 0.66 | 0.668111 |
Target: 5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3' miRNA: 3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 37168 | 0.66 | 0.665232 |
Target: 5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3' miRNA: 3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 39955 | 0.66 | 0.65851 |
Target: 5'- -aCGGCGACCUCGGcuGCGaGuCUGCGGu -3' miRNA: 3'- ugGCUGCUGGGGCUu-CGC-C-GGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 24230 | 0.66 | 0.65851 |
Target: 5'- cACCuGACGAugacuugcaCCCCaccGCuGCCGCGGAa -3' miRNA: 3'- -UGG-CUGCU---------GGGGcuuCGcCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 95366 | 0.66 | 0.657548 |
Target: 5'- -gCGGCGGCCCgGccucggguuucacGAGCuGGCCGCGc- -3' miRNA: 3'- ugGCUGCUGGGgC-------------UUCG-CCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 7132 | 0.66 | 0.64889 |
Target: 5'- gGCCGACuGAgCCgaCGAAacGUGGUCGCGGc -3' miRNA: 3'- -UGGCUG-CUgGG--GCUU--CGCCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 38320 | 0.66 | 0.64889 |
Target: 5'- gGCCGACGaggguuggcggGCCCUGGccgugaugcugGGCGGCgggGCGGu -3' miRNA: 3'- -UGGCUGC-----------UGGGGCU-----------UCGCCGg--CGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 10004 | 0.66 | 0.64889 |
Target: 5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3' miRNA: 3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 99803 | 0.66 | 0.639258 |
Target: 5'- gGCCGAggcgauggucgcCGACCCCGggGUaaGGCU--GGAg -3' miRNA: 3'- -UGGCU------------GCUGGGGCuuCG--CCGGcgCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 156269 | 0.66 | 0.639258 |
Target: 5'- aACCGucauCG-CCUCGGuGGUGGUCGCGGu -3' miRNA: 3'- -UGGCu---GCuGGGGCU-UCGCCGGCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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