miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 54240 0.67 0.607475
Target:  5'- --aGGCGGCCCCGcgcgccaacgugucGAGUGGgaGCGGGg -3'
miRNA:   3'- uggCUGCUGGGGC--------------UUCGCCggCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 101036 0.67 0.610361
Target:  5'- cCCGGCGAUgCCc--GCGGCCcgGUGGAg -3'
miRNA:   3'- uGGCUGCUGgGGcuuCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 10004 0.66 0.64889
Target:  5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3'
miRNA:   3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5'
24421 5' -62.9 NC_005264.1 + 5337 0.66 0.668111
Target:  5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3'
miRNA:   3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 120536 0.68 0.553112
Target:  5'- uGCCGGCaGCCCUGcgaCGGCCcCGGAa -3'
miRNA:   3'- -UGGCUGcUGGGGCuucGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 4745 0.67 0.581592
Target:  5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3'
miRNA:   3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 92180 0.66 0.619987
Target:  5'- uGCCGGCGGCgCC---GCGGCCaCGGu -3'
miRNA:   3'- -UGGCUGCUGgGGcuuCGCCGGcGCCu -5'
24421 5' -62.9 NC_005264.1 + 89947 0.66 0.668111
Target:  5'- gGCCGAau-CCCUGAAGCaGGCaagccguGUGGAa -3'
miRNA:   3'- -UGGCUgcuGGGGCUUCG-CCGg------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 110517 0.67 0.587328
Target:  5'- cGCCcaGCGACCCUGAAGCuGCagaacuuuauaagGCGGAg -3'
miRNA:   3'- -UGGc-UGCUGGGGCUUCGcCGg------------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 94377 0.66 0.668111
Target:  5'- cACCGACGAaguggugucgucCCUCGucuauGaucaGGCCGCGGc -3'
miRNA:   3'- -UGGCUGCU------------GGGGCuu---Cg---CCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 21941 0.66 0.619987
Target:  5'- uGCCGcuuCGAUggucgaugCCCGAgAGUGGUCGCGGc -3'
miRNA:   3'- -UGGCu--GCUG--------GGGCU-UCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 141467 0.67 0.600749
Target:  5'- -gCGGCGggGCCucuuuccaccggCCGAGGCGGCC-CGGGa -3'
miRNA:   3'- ugGCUGC--UGG------------GGCUUCGCCGGcGCCU- -5'
24421 5' -62.9 NC_005264.1 + 113261 0.66 0.629622
Target:  5'- cGCCGGCGGCgUgcgccgagaaggUGAAGCGGUCGCu-- -3'
miRNA:   3'- -UGGCUGCUGgG------------GCUUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 99803 0.66 0.639258
Target:  5'- gGCCGAggcgauggucgcCGACCCCGggGUaaGGCU--GGAg -3'
miRNA:   3'- -UGGCU------------GCUGGGGCuuCG--CCGGcgCCU- -5'
24421 5' -62.9 NC_005264.1 + 95366 0.66 0.657548
Target:  5'- -gCGGCGGCCCgGccucggguuucacGAGCuGGCCGCGc- -3'
miRNA:   3'- ugGCUGCUGGGgC-------------UUCG-CCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 37168 0.66 0.665232
Target:  5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3'
miRNA:   3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 102854 0.68 0.543708
Target:  5'- gGCCGucucgcucGCGGCCaCCGccgcguggcuGAGCGGC-GCGGAc -3'
miRNA:   3'- -UGGC--------UGCUGG-GGC----------UUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 109882 0.68 0.553112
Target:  5'- aGCgGAauACCCCGcGGCGcaaugcGCCGCGGGc -3'
miRNA:   3'- -UGgCUgcUGGGGCuUCGC------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 41331 0.67 0.562564
Target:  5'- cCCGcCGACCaucguCGAAGCaGCCGCGa- -3'
miRNA:   3'- uGGCuGCUGGg----GCUUCGcCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 13603 0.67 0.580637
Target:  5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3'
miRNA:   3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.