miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 35818 0.68 0.534357
Target:  5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3'
miRNA:   3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5'
24421 5' -62.9 NC_005264.1 + 56823 0.7 0.395068
Target:  5'- uGCgCGGCGGCCCUagcuAGCGGCuCGUGGc -3'
miRNA:   3'- -UG-GCUGCUGGGGcu--UCGCCG-GCGCCu -5'
24421 5' -62.9 NC_005264.1 + 42766 0.7 0.402279
Target:  5'- uGCCGAgCGACCCgGGuGGCcaguuacGGCCgGCGGAa -3'
miRNA:   3'- -UGGCU-GCUGGGgCU-UCG-------CCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 6002 0.7 0.426906
Target:  5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3'
miRNA:   3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 152667 0.68 0.553112
Target:  5'- uGCCGACGACaagauacucgCCGAGGCcuGGaCGCGGu -3'
miRNA:   3'- -UGGCUGCUGg---------GGCUUCG--CCgGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 33998 0.68 0.553112
Target:  5'- -gCGGCGGCCCaUGuAGcCGGCCGCGu- -3'
miRNA:   3'- ugGCUGCUGGG-GCuUC-GCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 38811 0.68 0.543708
Target:  5'- -gCGGCGACCCCGgcGCGGaCGa-GAa -3'
miRNA:   3'- ugGCUGCUGGGGCuuCGCCgGCgcCU- -5'
24421 5' -62.9 NC_005264.1 + 61489 0.66 0.629622
Target:  5'- cGCCGACGcGCCCCGcggucucggcuAGCG-CCGCGc- -3'
miRNA:   3'- -UGGCUGC-UGGGGCu----------UCGCcGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 64415 0.66 0.629622
Target:  5'- gGCCGACG-CCgCGGgcacGGCGaugacgucuGCCGCGGc -3'
miRNA:   3'- -UGGCUGCuGGgGCU----UCGC---------CGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 162650 0.66 0.639258
Target:  5'- uUCGA-GGCUCgGAAGCGcGCCgGCGGGu -3'
miRNA:   3'- uGGCUgCUGGGgCUUCGC-CGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 9327 0.66 0.639258
Target:  5'- uCCGuuCGuCCCCGccagGGGCGGCCGCc-- -3'
miRNA:   3'- uGGCu-GCuGGGGC----UUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 154844 0.68 0.534357
Target:  5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3'
miRNA:   3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5'
24421 5' -62.9 NC_005264.1 + 16882 0.68 0.53809
Target:  5'- cGCCGGCGAaggUcgcagcagagaaauuCCCGu--CGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGCU---G---------------GGGCuucGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 20283 0.68 0.543708
Target:  5'- gACCGucugcgcgcuuGCGGCCCCGAGG-GGCUGaGGu -3'
miRNA:   3'- -UGGC-----------UGCUGGGGCUUCgCCGGCgCCu -5'
24421 5' -62.9 NC_005264.1 + 126159 0.66 0.64889
Target:  5'- gGCCGACuGAgCCgaCGAAacGUGGUCGCGGc -3'
miRNA:   3'- -UGGCUG-CUgGG--GCUU--CGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 157347 0.66 0.64889
Target:  5'- gGCCGACGaggguuggcggGCCCUGGccgugaugcugGGCGGCgggGCGGu -3'
miRNA:   3'- -UGGCUGC-----------UGGGGCU-----------UCGCCGg--CGCCu -5'
24421 5' -62.9 NC_005264.1 + 7577 0.66 0.64889
Target:  5'- cGCCGcCuACCCCGc-GCcGCUGCGGAg -3'
miRNA:   3'- -UGGCuGcUGGGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 156596 0.7 0.402279
Target:  5'- gACCG-CGACggaggcggcaaguCUCGcGGCGGCCGCGGc -3'
miRNA:   3'- -UGGCuGCUG-------------GGGCuUCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 161792 0.7 0.402279
Target:  5'- uGCCGAgCGACCCgGGuGGCcaguuacGGCCgGCGGAa -3'
miRNA:   3'- -UGGCU-GCUGGGgCU-UCG-------CCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 129031 0.66 0.64889
Target:  5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3'
miRNA:   3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.