miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 891 0.68 0.525063
Target:  5'- gACUGgguguACGGCCCCGugucGCgGGCCGCuGGGg -3'
miRNA:   3'- -UGGC-----UGCUGGGGCuu--CG-CCGGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 2406 0.69 0.479605
Target:  5'- cGCCGGCcuGCCUagGAAGaaagcggaGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGc-UGGGg-CUUCg-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 4266 0.68 0.553112
Target:  5'- uGCCGcGCGggaACCgCGggGCGGCgGCaGAg -3'
miRNA:   3'- -UGGC-UGC---UGGgGCuuCGCCGgCGcCU- -5'
24421 5' -62.9 NC_005264.1 + 4745 0.67 0.581592
Target:  5'- aGCCGGCG-UCCgGggGUGgaccGCCGCGcGAa -3'
miRNA:   3'- -UGGCUGCuGGGgCuuCGC----CGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 5337 0.66 0.668111
Target:  5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3'
miRNA:   3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 5603 0.66 0.668111
Target:  5'- gAUCGGCGA--CCGGAGCcgcuaucgGGCCGCGcGAc -3'
miRNA:   3'- -UGGCUGCUggGGCUUCG--------CCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 6002 0.7 0.426906
Target:  5'- gUCGuCGGCCCCGAcgGGCGGggaggcuCCGgGGAa -3'
miRNA:   3'- uGGCuGCUGGGGCU--UCGCC-------GGCgCCU- -5'
24421 5' -62.9 NC_005264.1 + 7068 0.68 0.515831
Target:  5'- cGCCGGcCGGCgCCGucGC-GCUGCGGGg -3'
miRNA:   3'- -UGGCU-GCUGgGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 7132 0.66 0.64889
Target:  5'- gGCCGACuGAgCCgaCGAAacGUGGUCGCGGc -3'
miRNA:   3'- -UGGCUG-CUgGG--GCUU--CGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 7577 0.66 0.64889
Target:  5'- cGCCGcCuACCCCGc-GCcGCUGCGGAg -3'
miRNA:   3'- -UGGCuGcUGGGGCuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 9327 0.66 0.639258
Target:  5'- uCCGuuCGuCCCCGccagGGGCGGCCGCc-- -3'
miRNA:   3'- uGGCu-GCuGGGGC----UUCGCCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 10004 0.66 0.64889
Target:  5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3'
miRNA:   3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5'
24421 5' -62.9 NC_005264.1 + 13093 0.67 0.600749
Target:  5'- uCCGAgGAUUCCGAA-CGGagCGCGGAc -3'
miRNA:   3'- uGGCUgCUGGGGCUUcGCCg-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 13299 0.72 0.320775
Target:  5'- gUCGugGAgcuCCCCGGAGgaCGGCCGCGcGGa -3'
miRNA:   3'- uGGCugCU---GGGGCUUC--GCCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 13449 0.73 0.263291
Target:  5'- gACgCGGCGGCgCCGAAGgGGCUccuGCGGGg -3'
miRNA:   3'- -UG-GCUGCUGgGGCUUCgCCGG---CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 13603 0.67 0.580637
Target:  5'- gACCGGCGAUCgCGGucgggacgcgggcAGgGGCgGCGGu -3'
miRNA:   3'- -UGGCUGCUGGgGCU-------------UCgCCGgCGCCu -5'
24421 5' -62.9 NC_005264.1 + 16472 0.72 0.300626
Target:  5'- uCCGACGACgcagCCGcGGUGGCCuGCGGGg -3'
miRNA:   3'- uGGCUGCUGg---GGCuUCGCCGG-CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 16566 0.7 0.403085
Target:  5'- gUgGGCGGCgCCGggGCGGCgGCGc- -3'
miRNA:   3'- uGgCUGCUGgGGCuuCGCCGgCGCcu -5'
24421 5' -62.9 NC_005264.1 + 16882 0.68 0.53809
Target:  5'- cGCCGGCGAaggUcgcagcagagaaauuCCCGu--CGGCCGCGGAc -3'
miRNA:   3'- -UGGCUGCU---G---------------GGGCuucGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 17996 0.7 0.411204
Target:  5'- aGCCGGCaccGGCUCUGAcggcggcgGGuCGGCCGCGGu -3'
miRNA:   3'- -UGGCUG---CUGGGGCU--------UC-GCCGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.