miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 3' -55.6 NC_005264.1 + 120139 0.66 0.934138
Target:  5'- -aGGaGGACggagCGccgGCCGGCGaUGACCg -3'
miRNA:   3'- gaCCaCCUGa---GCa--CGGUUGC-ACUGGa -5'
24422 3' -55.6 NC_005264.1 + 117685 0.66 0.934138
Target:  5'- gUGGUGGugUCGgcGUCgAGCGUcACCg -3'
miRNA:   3'- gACCACCugAGCa-CGG-UUGCAcUGGa -5'
24422 3' -55.6 NC_005264.1 + 32707 0.67 0.906323
Target:  5'- aUGGggcaGGAUUCGUaCC-AUGUGACCUc -3'
miRNA:   3'- gACCa---CCUGAGCAcGGuUGCACUGGA- -5'
24422 3' -55.6 NC_005264.1 + 151733 0.67 0.906323
Target:  5'- aUGGggcaGGAUUCGUaCC-AUGUGACCUc -3'
miRNA:   3'- gACCa---CCUGAGCAcGGuUGCACUGGA- -5'
24422 3' -55.6 NC_005264.1 + 21450 0.67 0.879874
Target:  5'- gUGGUcgGGGCUCGcgauggUGUCGACGUGGauuCCUg -3'
miRNA:   3'- gACCA--CCUGAGC------ACGGUUGCACU---GGA- -5'
24422 3' -55.6 NC_005264.1 + 68341 0.67 0.879874
Target:  5'- ----cGGACUCGUGCCcaGACGuUGACg- -3'
miRNA:   3'- gaccaCCUGAGCACGG--UUGC-ACUGga -5'
24422 3' -55.6 NC_005264.1 + 161779 0.68 0.833753
Target:  5'- uUGGaUGGACaCGUGCCGagcgacccGgGUGGCCa -3'
miRNA:   3'- gACC-ACCUGaGCACGGU--------UgCACUGGa -5'
24422 3' -55.6 NC_005264.1 + 42753 0.68 0.833753
Target:  5'- uUGGaUGGACaCGUGCCGagcgacccGgGUGGCCa -3'
miRNA:   3'- gACC-ACCUGaGCACGGU--------UgCACUGGa -5'
24422 3' -55.6 NC_005264.1 + 131973 0.69 0.790263
Target:  5'- -aGGUGGGCUCGcgacgacagGCCGgugGCGgugGGCCg -3'
miRNA:   3'- gaCCACCUGAGCa--------CGGU---UGCa--CUGGa -5'
24422 3' -55.6 NC_005264.1 + 157939 0.7 0.752876
Target:  5'- ----gGGACggCG-GCCAGCGUGGCCUc -3'
miRNA:   3'- gaccaCCUGa-GCaCGGUUGCACUGGA- -5'
24422 3' -55.6 NC_005264.1 + 18818 0.79 0.281344
Target:  5'- gUGGUccgGGAUUCGUGCC-AUGUGACCUc -3'
miRNA:   3'- gACCA---CCUGAGCACGGuUGCACUGGA- -5'
24422 3' -55.6 NC_005264.1 + 99944 1.08 0.003896
Target:  5'- gCUGGUGGACUCGUGCCAACGUGACCUa -3'
miRNA:   3'- -GACCACCUGAGCACGGUUGCACUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.