miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 150620 0.66 0.873464
Target:  5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3'
miRNA:   3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 93577 0.66 0.873464
Target:  5'- --cGCGCCccauggcaGcGGAUGAGGCGcGCGAg -3'
miRNA:   3'- guuCGCGGag------CaCCUGCUCCGC-UGCU- -5'
24422 5' -58 NC_005264.1 + 129596 0.66 0.873464
Target:  5'- gCAGGCGCUgc---GGCGcGGCGGCGAa -3'
miRNA:   3'- -GUUCGCGGagcacCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 31593 0.66 0.873464
Target:  5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3'
miRNA:   3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 133246 0.66 0.873464
Target:  5'- cCAAGCGCCgacgCGcaagacaaaGGACGcaGCGACGGg -3'
miRNA:   3'- -GUUCGCGGa---GCa--------CCUGCucCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 151371 0.66 0.866257
Target:  5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3'
miRNA:   3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5'
24422 5' -58 NC_005264.1 + 146976 0.66 0.866257
Target:  5'- aCAGGaCGCCgaagaCGaGGAUGAGGaCGAgGAa -3'
miRNA:   3'- -GUUC-GCGGa----GCaCCUGCUCC-GCUgCU- -5'
24422 5' -58 NC_005264.1 + 32344 0.66 0.866257
Target:  5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3'
miRNA:   3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5'
24422 5' -58 NC_005264.1 + 38444 0.66 0.865526
Target:  5'- uCGAGCGCCggUGUGaaucauccGCGAGGCcgcccggGACGAg -3'
miRNA:   3'- -GUUCGCGGa-GCACc-------UGCUCCG-------CUGCU- -5'
24422 5' -58 NC_005264.1 + 105595 0.66 0.865526
Target:  5'- uCGAGCGCCUcaagaccguggugCGUGGGaaauUGAGGcCGuCGGg -3'
miRNA:   3'- -GUUCGCGGA-------------GCACCU----GCUCC-GCuGCU- -5'
24422 5' -58 NC_005264.1 + 157471 0.66 0.865526
Target:  5'- uCGAGCGCCggUGUGaaucauccGCGAGGCcgcccggGACGAg -3'
miRNA:   3'- -GUUCGCGGa-GCACc-------UGCUCCG-------CUGCU- -5'
24422 5' -58 NC_005264.1 + 48375 0.66 0.85885
Target:  5'- gGGGCGCagcCGguagacugGGGCGucGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGga-GCa-------CCUGC--UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 93804 0.66 0.85885
Target:  5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3'
miRNA:   3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5357 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 87038 0.66 0.85885
Target:  5'- --cGCGCCUac-GGAC--GGCGACGAc -3'
miRNA:   3'- guuCGCGGAgcaCCUGcuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 124384 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 114466 0.66 0.851247
Target:  5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3'
miRNA:   3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5'
24422 5' -58 NC_005264.1 + 16559 0.66 0.851247
Target:  5'- -cAGCGCg--GUGGGCGgcgccgGGGCGGCGGc -3'
miRNA:   3'- guUCGCGgagCACCUGC------UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 54251 0.66 0.843454
Target:  5'- --cGCGCCaacgugucgaGUGGgaGCGGGGCGAgGAc -3'
miRNA:   3'- guuCGCGGag--------CACC--UGCUCCGCUgCU- -5'
24422 5' -58 NC_005264.1 + 150436 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.