Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24422 | 5' | -58 | NC_005264.1 | + | 93804 | 0.66 | 0.85885 |
Target: 5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3' miRNA: 3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 5357 | 0.66 | 0.85885 |
Target: 5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3' miRNA: 3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 31409 | 0.66 | 0.835479 |
Target: 5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3' miRNA: 3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 48375 | 0.66 | 0.85885 |
Target: 5'- gGGGCGCagcCGguagacugGGGCGucGGGCGGCGGc -3' miRNA: 3'- gUUCGCGga-GCa-------CCUGC--UCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150436 | 0.66 | 0.835479 |
Target: 5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3' miRNA: 3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 30603 | 0.67 | 0.827328 |
Target: 5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3' miRNA: 3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 131587 | 0.67 | 0.793104 |
Target: 5'- -uGGCGCCUaggUGUGGAgGGaGCGGCGc -3' miRNA: 3'- guUCGCGGA---GCACCUgCUcCGCUGCu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 38028 | 0.67 | 0.784182 |
Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 157055 | 0.67 | 0.784182 |
Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 56234 | 0.67 | 0.810524 |
Target: 5'- gCGAGCGUCgCGcGGcuuuuguCGAGGUGGCGGg -3' miRNA: 3'- -GUUCGCGGaGCaCCu------GCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 67005 | 0.67 | 0.801887 |
Target: 5'- gCGAGUGCUgCcUGGACGGaGCGGCGGc -3' miRNA: 3'- -GUUCGCGGaGcACCUGCUcCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 1006 | 0.67 | 0.827328 |
Target: 5'- --cGCGCCcgUGUGGugGGGG-GGCa- -3' miRNA: 3'- guuCGCGGa-GCACCugCUCCgCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 149630 | 0.67 | 0.827328 |
Target: 5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3' miRNA: 3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 27900 | 0.67 | 0.827328 |
Target: 5'- -cAGCGUCUCGgcgaGGGUGAG-CGACGAc -3' miRNA: 3'- guUCGCGGAGCa---CCUGCUCcGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 81888 | 0.68 | 0.765957 |
Target: 5'- -uGGCGCCUUG-GcGGCGAugGGCgGGCGAg -3' miRNA: 3'- guUCGCGGAGCaC-CUGCU--CCG-CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150210 | 0.68 | 0.737789 |
Target: 5'- -uGGCgGCCUCGcGGuauagucuuGCGcGGCGACGAg -3' miRNA: 3'- guUCG-CGGAGCaCC---------UGCuCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 118920 | 0.68 | 0.737789 |
Target: 5'- -uGGC-CCUCGacGuCGAGGCGACGGc -3' miRNA: 3'- guUCGcGGAGCacCuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150561 | 0.68 | 0.728213 |
Target: 5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3' miRNA: 3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 48388 | 0.68 | 0.77513 |
Target: 5'- gAGGCGCUcgacguUCGU---CGAGGCGACGGc -3' miRNA: 3'- gUUCGCGG------AGCAccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 26120 | 0.68 | 0.747278 |
Target: 5'- --cGCGgCUCGUGG-CGcGGCGcCGAg -3' miRNA: 3'- guuCGCgGAGCACCuGCuCCGCuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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