miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 150561 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 144505 0.69 0.678327
Target:  5'- aGAGUGCCgaaggcgUCGUGGGCaGAGGCaacuggcagGGCGGg -3'
miRNA:   3'- gUUCGCGG-------AGCACCUG-CUCCG---------CUGCU- -5'
24422 5' -58 NC_005264.1 + 55168 0.69 0.688218
Target:  5'- --uGCgGCCUC-UGGGCGcggcugaAGGCGGCGAc -3'
miRNA:   3'- guuCG-CGGAGcACCUGC-------UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 135191 0.69 0.708833
Target:  5'- cCGAGCGCCgCGUGGccaaACGAGuucgcGCGACc- -3'
miRNA:   3'- -GUUCGCGGaGCACC----UGCUC-----CGCUGcu -5'
24422 5' -58 NC_005264.1 + 9274 0.69 0.718558
Target:  5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3'
miRNA:   3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 13033 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 153424 0.7 0.659443
Target:  5'- ---uCGCCUCGcUGGAUGAGGCG-Ca- -3'
miRNA:   3'- guucGCGGAGC-ACCUGCUCCGCuGcu -5'
24422 5' -58 NC_005264.1 + 110136 0.7 0.639484
Target:  5'- --cGCGCUUUuggGGGCG-GGCGGCGAa -3'
miRNA:   3'- guuCGCGGAGca-CCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 124284 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 140604 0.7 0.619503
Target:  5'- gAGGCGaCCgcccagacCGccGACGAGGCGACGAc -3'
miRNA:   3'- gUUCGC-GGa-------GCacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 132060 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5257 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 36303 0.71 0.599558
Target:  5'- gAAGaGCC-CGUaGACGAGGCGAUGGu -3'
miRNA:   3'- gUUCgCGGaGCAcCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 71610 0.71 0.609522
Target:  5'- gAAGC-CCUCaccGGCGAGGCGGCGGc -3'
miRNA:   3'- gUUCGcGGAGcacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 3621 0.71 0.589616
Target:  5'- uGGGCGCU--GUGGGCGGGGUGGgGGu -3'
miRNA:   3'- gUUCGCGGagCACCUGCUCCGCUgCU- -5'
24422 5' -58 NC_005264.1 + 95338 0.72 0.521188
Target:  5'- cCGGGCGCCgcgaaaCGgacucGGCGGGGCGGCGGc -3'
miRNA:   3'- -GUUCGCGGa-----GCac---CUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 39806 0.72 0.511645
Target:  5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3'
miRNA:   3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 158832 0.72 0.511645
Target:  5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3'
miRNA:   3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 133513 0.72 0.521188
Target:  5'- -cAGCGCCUCGUGGAUcuuaaccaccaGAccuguaacgGGCGGCGu -3'
miRNA:   3'- guUCGCGGAGCACCUG-----------CU---------CCGCUGCu -5'
24422 5' -58 NC_005264.1 + 68041 0.72 0.540474
Target:  5'- aUAAcCGCUUcCGUGcccGACGAGGCGGCGAg -3'
miRNA:   3'- -GUUcGCGGA-GCAC---CUGCUCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.