miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 5257 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 124284 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 140604 0.7 0.619503
Target:  5'- gAGGCGaCCgcccagacCGccGACGAGGCGACGAc -3'
miRNA:   3'- gUUCGC-GGa-------GCacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 132060 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 55168 0.69 0.688218
Target:  5'- --uGCgGCCUC-UGGGCGcggcugaAGGCGGCGAc -3'
miRNA:   3'- guuCG-CGGAGcACCUGC-------UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 9274 0.69 0.718558
Target:  5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3'
miRNA:   3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 135191 0.69 0.708833
Target:  5'- cCGAGCGCCgCGUGGccaaACGAGuucgcGCGACc- -3'
miRNA:   3'- -GUUCGCGGaGCACC----UGCUC-----CGCUGcu -5'
24422 5' -58 NC_005264.1 + 144505 0.69 0.678327
Target:  5'- aGAGUGCCgaaggcgUCGUGGGCaGAGGCaacuggcagGGCGGg -3'
miRNA:   3'- gUUCGCGG-------AGCACCUG-CUCCG---------CUGCU- -5'
24422 5' -58 NC_005264.1 + 150210 0.68 0.737789
Target:  5'- -uGGCgGCCUCGcGGuauagucuuGCGcGGCGACGAg -3'
miRNA:   3'- guUCG-CGGAGCaCC---------UGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 81888 0.68 0.765957
Target:  5'- -uGGCGCCUUG-GcGGCGAugGGCgGGCGAg -3'
miRNA:   3'- guUCGCGGAGCaC-CUGCU--CCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 118920 0.68 0.737789
Target:  5'- -uGGC-CCUCGacGuCGAGGCGACGGc -3'
miRNA:   3'- guUCGcGGAGCacCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 31534 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 150561 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 26120 0.68 0.747278
Target:  5'- --cGCGgCUCGUGG-CGcGGCGcCGAg -3'
miRNA:   3'- guuCGCgGAGCACCuGCuCCGCuGCU- -5'
24422 5' -58 NC_005264.1 + 48388 0.68 0.77513
Target:  5'- gAGGCGCUcgacguUCGU---CGAGGCGACGGc -3'
miRNA:   3'- gUUCGCGG------AGCAccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 38028 0.67 0.784182
Target:  5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3'
miRNA:   3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5'
24422 5' -58 NC_005264.1 + 56234 0.67 0.810524
Target:  5'- gCGAGCGUCgCGcGGcuuuuguCGAGGUGGCGGg -3'
miRNA:   3'- -GUUCGCGGaGCaCCu------GCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 157055 0.67 0.784182
Target:  5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3'
miRNA:   3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5'
24422 5' -58 NC_005264.1 + 149630 0.67 0.827328
Target:  5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3'
miRNA:   3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 27900 0.67 0.827328
Target:  5'- -cAGCGUCUCGgcgaGGGUGAG-CGACGAc -3'
miRNA:   3'- guUCGCGGAGCa---CCUGCUCcGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.