Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24422 | 5' | -58 | NC_005264.1 | + | 54251 | 0.66 | 0.843454 |
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Target: 5'- --cGCGCCaacgugucgaGUGGgaGCGGGGCGAgGAc -3' miRNA: 3'- guuCGCGGag--------CACC--UGCUCCGCUgCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 114466 | 0.66 | 0.851247 |
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Target: 5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3' miRNA: 3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 93804 | 0.66 | 0.85885 |
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Target: 5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3' miRNA: 3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 5357 | 0.66 | 0.85885 |
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Target: 5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3' miRNA: 3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 48375 | 0.66 | 0.85885 |
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Target: 5'- gGGGCGCagcCGguagacugGGGCGucGGGCGGCGGc -3' miRNA: 3'- gUUCGCGga-GCa-------CCUGC--UCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 87038 | 0.66 | 0.85885 |
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Target: 5'- --cGCGCCUac-GGAC--GGCGACGAc -3' miRNA: 3'- guuCGCGGAgcaCCUGcuCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 32344 | 0.66 | 0.866257 |
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Target: 5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3' miRNA: 3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 129596 | 0.66 | 0.873464 |
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Target: 5'- gCAGGCGCUgc---GGCGcGGCGGCGAa -3' miRNA: 3'- -GUUCGCGGagcacCUGCuCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 34322 | 0.66 | 0.835479 |
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Target: 5'- -uAGCGCCUU-----CGAGGCGGCGGu -3' miRNA: 3'- guUCGCGGAGcaccuGCUCCGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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