miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 99979 1.08 0.002386
Target:  5'- cCAAGCGCCUCGUGGACGAGGCGACGAa -3'
miRNA:   3'- -GUUCGCGGAGCACCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 25926 0.82 0.134405
Target:  5'- gGGGCGCUguaGcGGACGAGGCGACGAa -3'
miRNA:   3'- gUUCGCGGag-CaCCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 8290 0.76 0.34053
Target:  5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3'
miRNA:   3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5'
24422 5' -58 NC_005264.1 + 127317 0.76 0.34053
Target:  5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3'
miRNA:   3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5'
24422 5' -58 NC_005264.1 + 19424 0.75 0.387377
Target:  5'- gAGGCGCCgggUGUGGccGCGGGGCG-CGGg -3'
miRNA:   3'- gUUCGCGGa--GCACC--UGCUCCGCuGCU- -5'
24422 5' -58 NC_005264.1 + 156277 0.74 0.438271
Target:  5'- gGGGCGCaucacCGUGGACGAGGCGcuccugcCGAa -3'
miRNA:   3'- gUUCGCGga---GCACCUGCUCCGCu------GCU- -5'
24422 5' -58 NC_005264.1 + 37250 0.74 0.438271
Target:  5'- gGGGCGCaucacCGUGGACGAGGCGcuccugcCGAa -3'
miRNA:   3'- gUUCGCGga---GCACCUGCUCCGCu------GCU- -5'
24422 5' -58 NC_005264.1 + 56920 0.73 0.465112
Target:  5'- gGGGCGgCguacgugCGUGGcgcACGGGGCGACGGg -3'
miRNA:   3'- gUUCGCgGa------GCACC---UGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 154897 0.73 0.483473
Target:  5'- aAAGaCGCCgcggcCGUGGACGAcGCGugGAc -3'
miRNA:   3'- gUUC-GCGGa----GCACCUGCUcCGCugCU- -5'
24422 5' -58 NC_005264.1 + 39806 0.72 0.511645
Target:  5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3'
miRNA:   3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 158832 0.72 0.511645
Target:  5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3'
miRNA:   3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 133513 0.72 0.521188
Target:  5'- -cAGCGCCUCGUGGAUcuuaaccaccaGAccuguaacgGGCGGCGu -3'
miRNA:   3'- guUCGCGGAGCACCUG-----------CU---------CCGCUGCu -5'
24422 5' -58 NC_005264.1 + 95338 0.72 0.521188
Target:  5'- cCGGGCGCCgcgaaaCGgacucGGCGGGGCGGCGGc -3'
miRNA:   3'- -GUUCGCGGa-----GCac---CUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 68041 0.72 0.540474
Target:  5'- aUAAcCGCUUcCGUGcccGACGAGGCGGCGAg -3'
miRNA:   3'- -GUUcGCGGA-GCAC---CUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 3621 0.71 0.589616
Target:  5'- uGGGCGCU--GUGGGCGGGGUGGgGGu -3'
miRNA:   3'- gUUCGCGGagCACCUGCUCCGCUgCU- -5'
24422 5' -58 NC_005264.1 + 36303 0.71 0.599558
Target:  5'- gAAGaGCC-CGUaGACGAGGCGAUGGu -3'
miRNA:   3'- gUUCgCGGaGCAcCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 71610 0.71 0.609522
Target:  5'- gAAGC-CCUCaccGGCGAGGCGGCGGc -3'
miRNA:   3'- gUUCGcGGAGcacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5257 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 124284 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 140604 0.7 0.619503
Target:  5'- gAGGCGaCCgcccagacCGccGACGAGGCGACGAc -3'
miRNA:   3'- gUUCGC-GGa-------GCacCUGCUCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.