miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 31409 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5'
24422 5' -58 NC_005264.1 + 150436 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5'
24422 5' -58 NC_005264.1 + 91902 0.66 0.835479
Target:  5'- --cGCGgCagCGaUGGGCGGGcGCGGCGAc -3'
miRNA:   3'- guuCGCgGa-GC-ACCUGCUC-CGCUGCU- -5'
24422 5' -58 NC_005264.1 + 33876 0.66 0.835479
Target:  5'- gGAGCGUC-CGcu--CGAGGCGGCGGu -3'
miRNA:   3'- gUUCGCGGaGCaccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 34322 0.66 0.835479
Target:  5'- -uAGCGCCUU-----CGAGGCGGCGGu -3'
miRNA:   3'- guUCGCGGAGcaccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 149630 0.67 0.827328
Target:  5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3'
miRNA:   3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 27900 0.67 0.827328
Target:  5'- -cAGCGUCUCGgcgaGGGUGAG-CGACGAc -3'
miRNA:   3'- guUCGCGGAGCa---CCUGCUCcGCUGCU- -5'
24422 5' -58 NC_005264.1 + 1006 0.67 0.827328
Target:  5'- --cGCGCCcgUGUGGugGGGG-GGCa- -3'
miRNA:   3'- guuCGCGGa-GCACCugCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 30603 0.67 0.827328
Target:  5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3'
miRNA:   3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 56234 0.67 0.810524
Target:  5'- gCGAGCGUCgCGcGGcuuuuguCGAGGUGGCGGg -3'
miRNA:   3'- -GUUCGCGGaGCaCCu------GCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 67005 0.67 0.801887
Target:  5'- gCGAGUGCUgCcUGGACGGaGCGGCGGc -3'
miRNA:   3'- -GUUCGCGGaGcACCUGCUcCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 131587 0.67 0.793104
Target:  5'- -uGGCGCCUaggUGUGGAgGGaGCGGCGc -3'
miRNA:   3'- guUCGCGGA---GCACCUgCUcCGCUGCu -5'
24422 5' -58 NC_005264.1 + 157055 0.67 0.784182
Target:  5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3'
miRNA:   3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5'
24422 5' -58 NC_005264.1 + 38028 0.67 0.784182
Target:  5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3'
miRNA:   3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5'
24422 5' -58 NC_005264.1 + 48388 0.68 0.77513
Target:  5'- gAGGCGCUcgacguUCGU---CGAGGCGACGGc -3'
miRNA:   3'- gUUCGCGG------AGCAccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 81888 0.68 0.765957
Target:  5'- -uGGCGCCUUG-GcGGCGAugGGCgGGCGAg -3'
miRNA:   3'- guUCGCGGAGCaC-CUGCU--CCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 26120 0.68 0.747278
Target:  5'- --cGCGgCUCGUGG-CGcGGCGcCGAg -3'
miRNA:   3'- guuCGCgGAGCACCuGCuCCGCuGCU- -5'
24422 5' -58 NC_005264.1 + 150210 0.68 0.737789
Target:  5'- -uGGCgGCCUCGcGGuauagucuuGCGcGGCGACGAg -3'
miRNA:   3'- guUCG-CGGAGCaCC---------UGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 118920 0.68 0.737789
Target:  5'- -uGGC-CCUCGacGuCGAGGCGACGGc -3'
miRNA:   3'- guUCGcGGAGCacCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 150561 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.