miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 1006 0.67 0.827328
Target:  5'- --cGCGCCcgUGUGGugGGGG-GGCa- -3'
miRNA:   3'- guuCGCGGa-GCACCugCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 3621 0.71 0.589616
Target:  5'- uGGGCGCU--GUGGGCGGGGUGGgGGu -3'
miRNA:   3'- gUUCGCGGagCACCUGCUCCGCUgCU- -5'
24422 5' -58 NC_005264.1 + 5257 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5357 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 8290 0.76 0.34053
Target:  5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3'
miRNA:   3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5'
24422 5' -58 NC_005264.1 + 9274 0.69 0.718558
Target:  5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3'
miRNA:   3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 13033 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 16559 0.66 0.851247
Target:  5'- -cAGCGCg--GUGGGCGgcgccgGGGCGGCGGc -3'
miRNA:   3'- guUCGCGgagCACCUGC------UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 19424 0.75 0.387377
Target:  5'- gAGGCGCCgggUGUGGccGCGGGGCG-CGGg -3'
miRNA:   3'- gUUCGCGGa--GCACC--UGCUCCGCuGCU- -5'
24422 5' -58 NC_005264.1 + 25926 0.82 0.134405
Target:  5'- gGGGCGCUguaGcGGACGAGGCGACGAa -3'
miRNA:   3'- gUUCGCGGag-CaCCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 26120 0.68 0.747278
Target:  5'- --cGCGgCUCGUGG-CGcGGCGcCGAg -3'
miRNA:   3'- guuCGCgGAGCACCuGCuCCGCuGCU- -5'
24422 5' -58 NC_005264.1 + 27900 0.67 0.827328
Target:  5'- -cAGCGUCUCGgcgaGGGUGAG-CGACGAc -3'
miRNA:   3'- guUCGCGGAGCa---CCUGCUCcGCUGCU- -5'
24422 5' -58 NC_005264.1 + 30603 0.67 0.827328
Target:  5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3'
miRNA:   3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 31409 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5'
24422 5' -58 NC_005264.1 + 31534 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 31593 0.66 0.873464
Target:  5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3'
miRNA:   3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 32344 0.66 0.866257
Target:  5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3'
miRNA:   3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5'
24422 5' -58 NC_005264.1 + 33876 0.66 0.835479
Target:  5'- gGAGCGUC-CGcu--CGAGGCGGCGGu -3'
miRNA:   3'- gUUCGCGGaGCaccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 34322 0.66 0.835479
Target:  5'- -uAGCGCCUU-----CGAGGCGGCGGu -3'
miRNA:   3'- guUCGCGGAGcaccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 36303 0.71 0.599558
Target:  5'- gAAGaGCC-CGUaGACGAGGCGAUGGu -3'
miRNA:   3'- gUUCgCGGaGCAcCUGCUCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.