miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 101751 0.66 0.835479
Target:  5'- -cGGCGCgCUCcccaaaGGACGuGGUGGCGGc -3'
miRNA:   3'- guUCGCG-GAGca----CCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 105595 0.66 0.865526
Target:  5'- uCGAGCGCCUcaagaccguggugCGUGGGaaauUGAGGcCGuCGGg -3'
miRNA:   3'- -GUUCGCGGA-------------GCACCU----GCUCC-GCuGCU- -5'
24422 5' -58 NC_005264.1 + 110136 0.7 0.639484
Target:  5'- --cGCGCUUUuggGGGCG-GGCGGCGAa -3'
miRNA:   3'- guuCGCGGAGca-CCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 114466 0.66 0.851247
Target:  5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3'
miRNA:   3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5'
24422 5' -58 NC_005264.1 + 118920 0.68 0.737789
Target:  5'- -uGGC-CCUCGacGuCGAGGCGACGGc -3'
miRNA:   3'- guUCGcGGAGCacCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 124284 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 124384 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 127317 0.76 0.34053
Target:  5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3'
miRNA:   3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5'
24422 5' -58 NC_005264.1 + 129596 0.66 0.873464
Target:  5'- gCAGGCGCUgc---GGCGcGGCGGCGAa -3'
miRNA:   3'- -GUUCGCGGagcacCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 131587 0.67 0.793104
Target:  5'- -uGGCGCCUaggUGUGGAgGGaGCGGCGc -3'
miRNA:   3'- guUCGCGGA---GCACCUgCUcCGCUGCu -5'
24422 5' -58 NC_005264.1 + 132060 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 133246 0.66 0.873464
Target:  5'- cCAAGCGCCgacgCGcaagacaaaGGACGcaGCGACGGg -3'
miRNA:   3'- -GUUCGCGGa---GCa--------CCUGCucCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 133513 0.72 0.521188
Target:  5'- -cAGCGCCUCGUGGAUcuuaaccaccaGAccuguaacgGGCGGCGu -3'
miRNA:   3'- guUCGCGGAGCACCUG-----------CU---------CCGCUGCu -5'
24422 5' -58 NC_005264.1 + 135191 0.69 0.708833
Target:  5'- cCGAGCGCCgCGUGGccaaACGAGuucgcGCGACc- -3'
miRNA:   3'- -GUUCGCGGaGCACC----UGCUC-----CGCUGcu -5'
24422 5' -58 NC_005264.1 + 140604 0.7 0.619503
Target:  5'- gAGGCGaCCgcccagacCGccGACGAGGCGACGAc -3'
miRNA:   3'- gUUCGC-GGa-------GCacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 144505 0.69 0.678327
Target:  5'- aGAGUGCCgaaggcgUCGUGGGCaGAGGCaacuggcagGGCGGg -3'
miRNA:   3'- gUUCGCGG-------AGCACCUG-CUCCG---------CUGCU- -5'
24422 5' -58 NC_005264.1 + 146976 0.66 0.866257
Target:  5'- aCAGGaCGCCgaagaCGaGGAUGAGGaCGAgGAa -3'
miRNA:   3'- -GUUC-GCGGa----GCaCCUGCUCC-GCUgCU- -5'
24422 5' -58 NC_005264.1 + 149630 0.67 0.827328
Target:  5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3'
miRNA:   3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 150210 0.68 0.737789
Target:  5'- -uGGCgGCCUCGcGGuauagucuuGCGcGGCGACGAg -3'
miRNA:   3'- guUCG-CGGAGCaCC---------UGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 150436 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.