miRNA display CGI


Results 61 - 69 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 150561 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 150620 0.66 0.873464
Target:  5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3'
miRNA:   3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 151371 0.66 0.866257
Target:  5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3'
miRNA:   3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5'
24422 5' -58 NC_005264.1 + 153424 0.7 0.659443
Target:  5'- ---uCGCCUCGcUGGAUGAGGCG-Ca- -3'
miRNA:   3'- guucGCGGAGC-ACCUGCUCCGCuGcu -5'
24422 5' -58 NC_005264.1 + 154897 0.73 0.483473
Target:  5'- aAAGaCGCCgcggcCGUGGACGAcGCGugGAc -3'
miRNA:   3'- gUUC-GCGGa----GCACCUGCUcCGCugCU- -5'
24422 5' -58 NC_005264.1 + 156277 0.74 0.438271
Target:  5'- gGGGCGCaucacCGUGGACGAGGCGcuccugcCGAa -3'
miRNA:   3'- gUUCGCGga---GCACCUGCUCCGCu------GCU- -5'
24422 5' -58 NC_005264.1 + 157055 0.67 0.784182
Target:  5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3'
miRNA:   3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5'
24422 5' -58 NC_005264.1 + 157471 0.66 0.865526
Target:  5'- uCGAGCGCCggUGUGaaucauccGCGAGGCcgcccggGACGAg -3'
miRNA:   3'- -GUUCGCGGa-GCACc-------UGCUCCG-------CUGCU- -5'
24422 5' -58 NC_005264.1 + 158832 0.72 0.511645
Target:  5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3'
miRNA:   3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.