Results 61 - 69 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24422 | 5' | -58 | NC_005264.1 | + | 150561 | 0.68 | 0.728213 |
Target: 5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3' miRNA: 3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150620 | 0.66 | 0.873464 |
Target: 5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3' miRNA: 3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 151371 | 0.66 | 0.866257 |
Target: 5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3' miRNA: 3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 153424 | 0.7 | 0.659443 |
Target: 5'- ---uCGCCUCGcUGGAUGAGGCG-Ca- -3' miRNA: 3'- guucGCGGAGC-ACCUGCUCCGCuGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 154897 | 0.73 | 0.483473 |
Target: 5'- aAAGaCGCCgcggcCGUGGACGAcGCGugGAc -3' miRNA: 3'- gUUC-GCGGa----GCACCUGCUcCGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 156277 | 0.74 | 0.438271 |
Target: 5'- gGGGCGCaucacCGUGGACGAGGCGcuccugcCGAa -3' miRNA: 3'- gUUCGCGga---GCACCUGCUCCGCu------GCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 157055 | 0.67 | 0.784182 |
Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 157471 | 0.66 | 0.865526 |
Target: 5'- uCGAGCGCCggUGUGaaucauccGCGAGGCcgcccggGACGAg -3' miRNA: 3'- -GUUCGCGGa-GCACc-------UGCUCCG-------CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 158832 | 0.72 | 0.511645 |
Target: 5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3' miRNA: 3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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