miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 129596 0.66 0.873464
Target:  5'- gCAGGCGCUgc---GGCGcGGCGGCGAa -3'
miRNA:   3'- -GUUCGCGGagcacCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 127317 0.76 0.34053
Target:  5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3'
miRNA:   3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5'
24422 5' -58 NC_005264.1 + 124384 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 124284 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 118920 0.68 0.737789
Target:  5'- -uGGC-CCUCGacGuCGAGGCGACGGc -3'
miRNA:   3'- guUCGcGGAGCacCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 114466 0.66 0.851247
Target:  5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3'
miRNA:   3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5'
24422 5' -58 NC_005264.1 + 110136 0.7 0.639484
Target:  5'- --cGCGCUUUuggGGGCG-GGCGGCGAa -3'
miRNA:   3'- guuCGCGGAGca-CCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 105595 0.66 0.865526
Target:  5'- uCGAGCGCCUcaagaccguggugCGUGGGaaauUGAGGcCGuCGGg -3'
miRNA:   3'- -GUUCGCGGA-------------GCACCU----GCUCC-GCuGCU- -5'
24422 5' -58 NC_005264.1 + 101751 0.66 0.835479
Target:  5'- -cGGCGCgCUCcccaaaGGACGuGGUGGCGGc -3'
miRNA:   3'- guUCGCG-GAGca----CCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 99979 1.08 0.002386
Target:  5'- cCAAGCGCCUCGUGGACGAGGCGACGAa -3'
miRNA:   3'- -GUUCGCGGAGCACCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 95338 0.72 0.521188
Target:  5'- cCGGGCGCCgcgaaaCGgacucGGCGGGGCGGCGGc -3'
miRNA:   3'- -GUUCGCGGa-----GCac---CUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 93804 0.66 0.85885
Target:  5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3'
miRNA:   3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 93577 0.66 0.873464
Target:  5'- --cGCGCCccauggcaGcGGAUGAGGCGcGCGAg -3'
miRNA:   3'- guuCGCGGag------CaCCUGCUCCGC-UGCU- -5'
24422 5' -58 NC_005264.1 + 91902 0.66 0.835479
Target:  5'- --cGCGgCagCGaUGGGCGGGcGCGGCGAc -3'
miRNA:   3'- guuCGCgGa-GC-ACCUGCUC-CGCUGCU- -5'
24422 5' -58 NC_005264.1 + 87038 0.66 0.85885
Target:  5'- --cGCGCCUac-GGAC--GGCGACGAc -3'
miRNA:   3'- guuCGCGGAgcaCCUGcuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 81888 0.68 0.765957
Target:  5'- -uGGCGCCUUG-GcGGCGAugGGCgGGCGAg -3'
miRNA:   3'- guUCGCGGAGCaC-CUGCU--CCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 71610 0.71 0.609522
Target:  5'- gAAGC-CCUCaccGGCGAGGCGGCGGc -3'
miRNA:   3'- gUUCGcGGAGcacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 68041 0.72 0.540474
Target:  5'- aUAAcCGCUUcCGUGcccGACGAGGCGGCGAg -3'
miRNA:   3'- -GUUcGCGGA-GCAC---CUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 67005 0.67 0.801887
Target:  5'- gCGAGUGCUgCcUGGACGGaGCGGCGGc -3'
miRNA:   3'- -GUUCGCGGaGcACCUGCUcCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 56920 0.73 0.465112
Target:  5'- gGGGCGgCguacgugCGUGGcgcACGGGGCGACGGg -3'
miRNA:   3'- gUUCGCgGa------GCACC---UGCUCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.