Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24422 | 5' | -58 | NC_005264.1 | + | 56234 | 0.67 | 0.810524 |
Target: 5'- gCGAGCGUCgCGcGGcuuuuguCGAGGUGGCGGg -3' miRNA: 3'- -GUUCGCGGaGCaCCu------GCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 55168 | 0.69 | 0.688218 |
Target: 5'- --uGCgGCCUC-UGGGCGcggcugaAGGCGGCGAc -3' miRNA: 3'- guuCG-CGGAGcACCUGC-------UCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 54251 | 0.66 | 0.843454 |
Target: 5'- --cGCGCCaacgugucgaGUGGgaGCGGGGCGAgGAc -3' miRNA: 3'- guuCGCGGag--------CACC--UGCUCCGCUgCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 48388 | 0.68 | 0.77513 |
Target: 5'- gAGGCGCUcgacguUCGU---CGAGGCGACGGc -3' miRNA: 3'- gUUCGCGG------AGCAccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 48375 | 0.66 | 0.85885 |
Target: 5'- gGGGCGCagcCGguagacugGGGCGucGGGCGGCGGc -3' miRNA: 3'- gUUCGCGga-GCa-------CCUGC--UCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 39806 | 0.72 | 0.511645 |
Target: 5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3' miRNA: 3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 38444 | 0.66 | 0.865526 |
Target: 5'- uCGAGCGCCggUGUGaaucauccGCGAGGCcgcccggGACGAg -3' miRNA: 3'- -GUUCGCGGa-GCACc-------UGCUCCG-------CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 38028 | 0.67 | 0.784182 |
Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 37250 | 0.74 | 0.438271 |
Target: 5'- gGGGCGCaucacCGUGGACGAGGCGcuccugcCGAa -3' miRNA: 3'- gUUCGCGga---GCACCUGCUCCGCu------GCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 36303 | 0.71 | 0.599558 |
Target: 5'- gAAGaGCC-CGUaGACGAGGCGAUGGu -3' miRNA: 3'- gUUCgCGGaGCAcCUGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 34322 | 0.66 | 0.835479 |
Target: 5'- -uAGCGCCUU-----CGAGGCGGCGGu -3' miRNA: 3'- guUCGCGGAGcaccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 33876 | 0.66 | 0.835479 |
Target: 5'- gGAGCGUC-CGcu--CGAGGCGGCGGu -3' miRNA: 3'- gUUCGCGGaGCaccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 32344 | 0.66 | 0.866257 |
Target: 5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3' miRNA: 3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 31593 | 0.66 | 0.873464 |
Target: 5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3' miRNA: 3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 31534 | 0.68 | 0.728213 |
Target: 5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3' miRNA: 3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 31409 | 0.66 | 0.835479 |
Target: 5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3' miRNA: 3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 30603 | 0.67 | 0.827328 |
Target: 5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3' miRNA: 3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 27900 | 0.67 | 0.827328 |
Target: 5'- -cAGCGUCUCGgcgaGGGUGAG-CGACGAc -3' miRNA: 3'- guUCGCGGAGCa---CCUGCUCcGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 26120 | 0.68 | 0.747278 |
Target: 5'- --cGCGgCUCGUGG-CGcGGCGcCGAg -3' miRNA: 3'- guuCGCgGAGCACCuGCuCCGCuGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 25926 | 0.82 | 0.134405 |
Target: 5'- gGGGCGCUguaGcGGACGAGGCGACGAa -3' miRNA: 3'- gUUCGCGGag-CaCCUGCUCCGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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