Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24422 | 5' | -58 | NC_005264.1 | + | 19424 | 0.75 | 0.387377 |
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Target: 5'- gAGGCGCCgggUGUGGccGCGGGGCG-CGGg -3' miRNA: 3'- gUUCGCGGa--GCACC--UGCUCCGCuGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 16559 | 0.66 | 0.851247 |
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Target: 5'- -cAGCGCg--GUGGGCGgcgccgGGGCGGCGGc -3' miRNA: 3'- guUCGCGgagCACCUGC------UCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 13033 | 0.7 | 0.669395 |
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Target: 5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3' miRNA: 3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 9274 | 0.69 | 0.718558 |
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Target: 5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3' miRNA: 3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 8290 | 0.76 | 0.34053 |
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Target: 5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3' miRNA: 3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 5357 | 0.66 | 0.85885 |
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Target: 5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3' miRNA: 3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 5257 | 0.7 | 0.615509 |
|
Target: 5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3' miRNA: 3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 3621 | 0.71 | 0.589616 |
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Target: 5'- uGGGCGCU--GUGGGCGGGGUGGgGGu -3' miRNA: 3'- gUUCGCGGagCACCUGCUCCGCUgCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 1006 | 0.67 | 0.827328 |
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Target: 5'- --cGCGCCcgUGUGGugGGGG-GGCa- -3' miRNA: 3'- guuCGCGGa-GCACCugCUCCgCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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