Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24422 | 5' | -58 | NC_005264.1 | + | 56234 | 0.67 | 0.810524 |
Target: 5'- gCGAGCGUCgCGcGGcuuuuguCGAGGUGGCGGg -3' miRNA: 3'- -GUUCGCGGaGCaCCu------GCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 135191 | 0.69 | 0.708833 |
Target: 5'- cCGAGCGCCgCGUGGccaaACGAGuucgcGCGACc- -3' miRNA: 3'- -GUUCGCGGaGCACC----UGCUC-----CGCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 9274 | 0.69 | 0.718558 |
Target: 5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3' miRNA: 3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150561 | 0.68 | 0.728213 |
Target: 5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3' miRNA: 3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 118920 | 0.68 | 0.737789 |
Target: 5'- -uGGC-CCUCGacGuCGAGGCGACGGc -3' miRNA: 3'- guUCGcGGAGCacCuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 26120 | 0.68 | 0.747278 |
Target: 5'- --cGCGgCUCGUGG-CGcGGCGcCGAg -3' miRNA: 3'- guuCGCgGAGCACCuGCuCCGCuGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 48388 | 0.68 | 0.77513 |
Target: 5'- gAGGCGCUcgacguUCGU---CGAGGCGACGGc -3' miRNA: 3'- gUUCGCGG------AGCAccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 157055 | 0.67 | 0.784182 |
Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 67005 | 0.67 | 0.801887 |
Target: 5'- gCGAGUGCUgCcUGGACGGaGCGGCGGc -3' miRNA: 3'- -GUUCGCGGaGcACCUGCUcCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 55168 | 0.69 | 0.688218 |
Target: 5'- --uGCgGCCUC-UGGGCGcggcugaAGGCGGCGAc -3' miRNA: 3'- guuCG-CGGAGcACCUGC-------UCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 132060 | 0.7 | 0.669395 |
Target: 5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3' miRNA: 3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 140604 | 0.7 | 0.619503 |
Target: 5'- gAGGCGaCCgcccagacCGccGACGAGGCGACGAc -3' miRNA: 3'- gUUCGC-GGa-------GCacCUGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 127317 | 0.76 | 0.34053 |
Target: 5'- aAGGCGCC-CGUGGGCGAcGGgGGCa- -3' miRNA: 3'- gUUCGCGGaGCACCUGCU-CCgCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 19424 | 0.75 | 0.387377 |
Target: 5'- gAGGCGCCgggUGUGGccGCGGGGCG-CGGg -3' miRNA: 3'- gUUCGCGGa--GCACC--UGCUCCGCuGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 156277 | 0.74 | 0.438271 |
Target: 5'- gGGGCGCaucacCGUGGACGAGGCGcuccugcCGAa -3' miRNA: 3'- gUUCGCGga---GCACCUGCUCCGCu------GCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 158832 | 0.72 | 0.511645 |
Target: 5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3' miRNA: 3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 68041 | 0.72 | 0.540474 |
Target: 5'- aUAAcCGCUUcCGUGcccGACGAGGCGGCGAg -3' miRNA: 3'- -GUUcGCGGA-GCAC---CUGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 3621 | 0.71 | 0.589616 |
Target: 5'- uGGGCGCU--GUGGGCGGGGUGGgGGu -3' miRNA: 3'- gUUCGCGGagCACCUGCUCCGCUgCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 36303 | 0.71 | 0.599558 |
Target: 5'- gAAGaGCC-CGUaGACGAGGCGAUGGu -3' miRNA: 3'- gUUCgCGGaGCAcCUGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 124284 | 0.7 | 0.615509 |
Target: 5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3' miRNA: 3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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