miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 150210 0.68 0.737789
Target:  5'- -uGGCgGCCUCGcGGuauagucuuGCGcGGCGACGAg -3'
miRNA:   3'- guUCG-CGGAGCaCC---------UGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 31534 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5'
24422 5' -58 NC_005264.1 + 144505 0.69 0.678327
Target:  5'- aGAGUGCCgaaggcgUCGUGGGCaGAGGCaacuggcagGGCGGg -3'
miRNA:   3'- gUUCGCGG-------AGCACCUG-CUCCG---------CUGCU- -5'
24422 5' -58 NC_005264.1 + 13033 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 153424 0.7 0.659443
Target:  5'- ---uCGCCUCGcUGGAUGAGGCG-Ca- -3'
miRNA:   3'- guucGCGGAGC-ACCUGCUCCGCuGcu -5'
24422 5' -58 NC_005264.1 + 110136 0.7 0.639484
Target:  5'- --cGCGCUUUuggGGGCG-GGCGGCGAa -3'
miRNA:   3'- guuCGCGGAGca-CCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5257 0.7 0.615509
Target:  5'- aGAGCGCCgggaggcgagucgCGgccGGACGgcgGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGGa------------GCa--CCUGC---UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 71610 0.71 0.609522
Target:  5'- gAAGC-CCUCaccGGCGAGGCGGCGGc -3'
miRNA:   3'- gUUCGcGGAGcacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 30603 0.67 0.827328
Target:  5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3'
miRNA:   3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 31409 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5'
24422 5' -58 NC_005264.1 + 129596 0.66 0.873464
Target:  5'- gCAGGCGCUgc---GGCGcGGCGGCGAa -3'
miRNA:   3'- -GUUCGCGGagcacCUGCuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 32344 0.66 0.866257
Target:  5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3'
miRNA:   3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5'
24422 5' -58 NC_005264.1 + 38444 0.66 0.865526
Target:  5'- uCGAGCGCCggUGUGaaucauccGCGAGGCcgcccggGACGAg -3'
miRNA:   3'- -GUUCGCGGa-GCACc-------UGCUCCG-------CUGCU- -5'
24422 5' -58 NC_005264.1 + 87038 0.66 0.85885
Target:  5'- --cGCGCCUac-GGAC--GGCGACGAc -3'
miRNA:   3'- guuCGCGGAgcaCCUGcuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 48375 0.66 0.85885
Target:  5'- gGGGCGCagcCGguagacugGGGCGucGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGga-GCa-------CCUGC--UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5357 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 93804 0.66 0.85885
Target:  5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3'
miRNA:   3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 114466 0.66 0.851247
Target:  5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3'
miRNA:   3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5'
24422 5' -58 NC_005264.1 + 54251 0.66 0.843454
Target:  5'- --cGCGCCaacgugucgaGUGGgaGCGGGGCGAgGAc -3'
miRNA:   3'- guuCGCGGag--------CACC--UGCUCCGCUgCU- -5'
24422 5' -58 NC_005264.1 + 101751 0.66 0.835479
Target:  5'- -cGGCGCgCUCcccaaaGGACGuGGUGGCGGc -3'
miRNA:   3'- guUCGCG-GAGca----CCUGCuCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.