Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24422 | 5' | -58 | NC_005264.1 | + | 93804 | 0.66 | 0.85885 |
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Target: 5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3' miRNA: 3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 114466 | 0.66 | 0.851247 |
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Target: 5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3' miRNA: 3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 54251 | 0.66 | 0.843454 |
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Target: 5'- --cGCGCCaacgugucgaGUGGgaGCGGGGCGAgGAc -3' miRNA: 3'- guuCGCGGag--------CACC--UGCUCCGCUgCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 101751 | 0.66 | 0.835479 |
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Target: 5'- -cGGCGCgCUCcccaaaGGACGuGGUGGCGGc -3' miRNA: 3'- guUCGCG-GAGca----CCUGCuCCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 31409 | 0.66 | 0.835479 |
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Target: 5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3' miRNA: 3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 30603 | 0.67 | 0.827328 |
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Target: 5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3' miRNA: 3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 131587 | 0.67 | 0.793104 |
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Target: 5'- -uGGCGCCUaggUGUGGAgGGaGCGGCGc -3' miRNA: 3'- guUCGCGGA---GCACCUgCUcCGCUGCu -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 38028 | 0.67 | 0.784182 |
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Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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| 24422 | 5' | -58 | NC_005264.1 | + | 31593 | 0.66 | 0.873464 |
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Target: 5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3' miRNA: 3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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