miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24422 5' -58 NC_005264.1 + 153424 0.7 0.659443
Target:  5'- ---uCGCCUCGcUGGAUGAGGCG-Ca- -3'
miRNA:   3'- guucGCGGAGC-ACCUGCUCCGCuGcu -5'
24422 5' -58 NC_005264.1 + 154897 0.73 0.483473
Target:  5'- aAAGaCGCCgcggcCGUGGACGAcGCGugGAc -3'
miRNA:   3'- gUUC-GCGGa----GCACCUGCUcCGCugCU- -5'
24422 5' -58 NC_005264.1 + 13033 0.7 0.669395
Target:  5'- gAGGUGUCgga-GGACGAgGGCGACGAg -3'
miRNA:   3'- gUUCGCGGagcaCCUGCU-CCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 5357 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 39806 0.72 0.511645
Target:  5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3'
miRNA:   3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5'
24422 5' -58 NC_005264.1 + 71610 0.71 0.609522
Target:  5'- gAAGC-CCUCaccGGCGAGGCGGCGGc -3'
miRNA:   3'- gUUCGcGGAGcacCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 56920 0.73 0.465112
Target:  5'- gGGGCGgCguacgugCGUGGcgcACGGGGCGACGGg -3'
miRNA:   3'- gUUCGCgGa------GCACC---UGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 99979 1.08 0.002386
Target:  5'- cCAAGCGCCUCGUGGACGAGGCGACGAa -3'
miRNA:   3'- -GUUCGCGGAGCACCUGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 48375 0.66 0.85885
Target:  5'- gGGGCGCagcCGguagacugGGGCGucGGGCGGCGGc -3'
miRNA:   3'- gUUCGCGga-GCa-------CCUGC--UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 87038 0.66 0.85885
Target:  5'- --cGCGCCUac-GGAC--GGCGACGAc -3'
miRNA:   3'- guuCGCGGAgcaCCUGcuCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 114466 0.66 0.851247
Target:  5'- uCGAGCGCCUCGacgcGGcacugcgcaACGAGGCcgccauGGCGu -3'
miRNA:   3'- -GUUCGCGGAGCa---CC---------UGCUCCG------CUGCu -5'
24422 5' -58 NC_005264.1 + 93804 0.66 0.85885
Target:  5'- gCAAGUuaGCCcuuuuccUGUGGcCGAGGUGGCGGu -3'
miRNA:   3'- -GUUCG--CGGa------GCACCuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 3621 0.71 0.589616
Target:  5'- uGGGCGCU--GUGGGCGGGGUGGgGGu -3'
miRNA:   3'- gUUCGCGGagCACCUGCUCCGCUgCU- -5'
24422 5' -58 NC_005264.1 + 124384 0.66 0.85885
Target:  5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3'
miRNA:   3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5'
24422 5' -58 NC_005264.1 + 16559 0.66 0.851247
Target:  5'- -cAGCGCg--GUGGGCGgcgccgGGGCGGCGGc -3'
miRNA:   3'- guUCGCGgagCACCUGC------UCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 91902 0.66 0.835479
Target:  5'- --cGCGgCagCGaUGGGCGGGcGCGGCGAc -3'
miRNA:   3'- guuCGCgGa-GC-ACCUGCUC-CGCUGCU- -5'
24422 5' -58 NC_005264.1 + 33876 0.66 0.835479
Target:  5'- gGAGCGUC-CGcu--CGAGGCGGCGGu -3'
miRNA:   3'- gUUCGCGGaGCaccuGCUCCGCUGCU- -5'
24422 5' -58 NC_005264.1 + 150436 0.66 0.835479
Target:  5'- gCGGGcCGCCUCG-GGGCGGGaGaucuuauagcuCGACGGg -3'
miRNA:   3'- -GUUC-GCGGAGCaCCUGCUC-C-----------GCUGCU- -5'
24422 5' -58 NC_005264.1 + 9274 0.69 0.718558
Target:  5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3'
miRNA:   3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5'
24422 5' -58 NC_005264.1 + 150561 0.68 0.728213
Target:  5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3'
miRNA:   3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.