Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24422 | 5' | -58 | NC_005264.1 | + | 68041 | 0.72 | 0.540474 |
Target: 5'- aUAAcCGCUUcCGUGcccGACGAGGCGGCGAg -3' miRNA: 3'- -GUUcGCGGA-GCAC---CUGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 158832 | 0.72 | 0.511645 |
Target: 5'- cCAAGCcCCUgGUGGGCGAGGaGGCa- -3' miRNA: 3'- -GUUCGcGGAgCACCUGCUCCgCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 91902 | 0.66 | 0.835479 |
Target: 5'- --cGCGgCagCGaUGGGCGGGcGCGGCGAc -3' miRNA: 3'- guuCGCgGa-GC-ACCUGCUC-CGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 19424 | 0.75 | 0.387377 |
Target: 5'- gAGGCGCCgggUGUGGccGCGGGGCG-CGGg -3' miRNA: 3'- gUUCGCGGa--GCACC--UGCUCCGCuGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 33876 | 0.66 | 0.835479 |
Target: 5'- gGAGCGUC-CGcu--CGAGGCGGCGGu -3' miRNA: 3'- gUUCGCGGaGCaccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 135191 | 0.69 | 0.708833 |
Target: 5'- cCGAGCGCCgCGUGGccaaACGAGuucgcGCGACc- -3' miRNA: 3'- -GUUCGCGGaGCACC----UGCUC-----CGCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 9274 | 0.69 | 0.718558 |
Target: 5'- -cAGCGUucUUCGUaguccaggcagGGugGAGGCGACGu -3' miRNA: 3'- guUCGCG--GAGCA-----------CCugCUCCGCUGCu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150561 | 0.68 | 0.728213 |
Target: 5'- gGAGgGCCgUUGgGGugGGGGCgGACGGc -3' miRNA: 3'- gUUCgCGG-AGCaCCugCUCCG-CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 151371 | 0.66 | 0.866257 |
Target: 5'- uGAGUGCUUCGgggGGugcuuCGGGGCuguucuGGCGAg -3' miRNA: 3'- gUUCGCGGAGCa--CCu----GCUCCG------CUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 93577 | 0.66 | 0.873464 |
Target: 5'- --cGCGCCccauggcaGcGGAUGAGGCGcGCGAg -3' miRNA: 3'- guuCGCGGag------CaCCUGCUCCGC-UGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 133246 | 0.66 | 0.873464 |
Target: 5'- cCAAGCGCCgacgCGcaagacaaaGGACGcaGCGACGGg -3' miRNA: 3'- -GUUCGCGGa---GCa--------CCUGCucCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 150620 | 0.66 | 0.873464 |
Target: 5'- gCGAGUcuGCuCUC-UGG-CGAGGCGGCGc -3' miRNA: 3'- -GUUCG--CG-GAGcACCuGCUCCGCUGCu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 149630 | 0.67 | 0.827328 |
Target: 5'- gAAGCaGCC-CG-GcGACGGcGGCGGCGAc -3' miRNA: 3'- gUUCG-CGGaGCaC-CUGCU-CCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 1006 | 0.67 | 0.827328 |
Target: 5'- --cGCGCCcgUGUGGugGGGG-GGCa- -3' miRNA: 3'- guuCGCGGa-GCACCugCUCCgCUGcu -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 56234 | 0.67 | 0.810524 |
Target: 5'- gCGAGCGUCgCGcGGcuuuuguCGAGGUGGCGGg -3' miRNA: 3'- -GUUCGCGGaGCaCCu------GCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 67005 | 0.67 | 0.801887 |
Target: 5'- gCGAGUGCUgCcUGGACGGaGCGGCGGc -3' miRNA: 3'- -GUUCGCGGaGcACCUGCUcCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 157055 | 0.67 | 0.784182 |
Target: 5'- uGGGCGCCUCgGUGGugcACGAcggucGCGugGGu -3' miRNA: 3'- gUUCGCGGAG-CACC---UGCUc----CGCugCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 48388 | 0.68 | 0.77513 |
Target: 5'- gAGGCGCUcgacguUCGU---CGAGGCGACGGc -3' miRNA: 3'- gUUCGCGG------AGCAccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 34322 | 0.66 | 0.835479 |
Target: 5'- -uAGCGCCUU-----CGAGGCGGCGGu -3' miRNA: 3'- guUCGCGGAGcaccuGCUCCGCUGCU- -5' |
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24422 | 5' | -58 | NC_005264.1 | + | 124384 | 0.66 | 0.85885 |
Target: 5'- cCGGGCgGCCUCGcGGAUGAuucacaccGGCGcuCGAu -3' miRNA: 3'- -GUUCG-CGGAGCaCCUGCU--------CCGCu-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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